RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 LLGL2Q6P1M3 1020 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 TTC30AQ86WT1 665 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 RHOT2Q8IXI1 618 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 RNF10Q8N5U6 811 aaKnown RBP10.59□□□□□ -0.71
HMGB3-201ENST00000325307 OTUD6BQ8N6M0 293 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 TRIM58Q8NG06 486 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 SPATA18Q8TC71 538 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 BCL7CQ8WUZ0 217 aaPredicted RBP10.59□□□□□ -0.71
HMGB3-201ENST00000325307 KRT82Q9NSB4 513 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 TMEM110-MUSTN1A8MSY1 372 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 GOLGA8SH3BPF8 625 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 MMP8P22894 467 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 GPD2P43304 727 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 BST2Q10589 180 aaKnown RBP10.59□□□□□ -0.71
HMGB3-201ENST00000325307 PDCLQ13371 301 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 TNS4Q8IZW8 715 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 FIBCD1Q8N539 461 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 ANKRD52Q8NB46 1076 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 OR10T2Q8NGX3 314 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 MYCBPAPQ8TBZ2 947 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 PCED1BQ96HM7 432 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 TMEM209Q96SK2 561 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 RTP3Q9BQQ7 232 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 CYTH4Q9UIA0 394 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 NCANO14594 1321 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 FNDC1Q4ZHG4 1894 aaPredicted RBP10.59□□□□□ -0.71
HMGB3-201ENST00000325307 C2CD2LO14523 706 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 TLL1O43897 1013 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 OR4Q2P0C623 313 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 CDH5P33151 784 aaPredicted RBP10.59□□□□□ -0.71
HMGB3-201ENST00000325307 PTPROQ16827 1216 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 PTPN20Q4JDL3 420 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 ZNF280DQ6N043 979 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 FUKQ8N0W3 1084 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 ZNF564Q8TBZ8 553 aaPredicted RBP10.59□□□□□ -0.71
HMGB3-201ENST00000325307 HERVK_113Q902F9 699 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 MYLPFQ96A32 169 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 C18orf8Q96DM3 657 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 IGSF21Q96ID5 467 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 CPXM1Q96SM3 734 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 HNRNPABQ99729 332 aaKnown RBP10.59□□□□□ -0.71
HMGB3-201ENST00000325307 TTPALQ9BTX7 342 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 INSL6Q9Y581 213 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 ATP8B3O60423 1300 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 LTBP2Q14767 1821 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 A0A0A6YYK5 440 aaPredicted RBP10.58□□□□□ -0.72
HMGB3-201ENST00000325307 BTNL10A8MVZ5 291 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 PALMO75781 387 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 FAM200BP0CF97 657 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 SLC39A12Q504Y0 691 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 DNAJC24Q6P3W2 148 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 DAAM2Q86T65 1068 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 HERC6Q8IVU3 1022 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 COLGALT1Q8NBJ5 622 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 VCPIP1Q96JH7 1222 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 SLC9A7Q96T83 725 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 B3GNT5Q9BYG0 378 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 RC3H2Q9HBD1 1191 aaKnown RBP10.58□□□□□ -0.72
HMGB3-201ENST00000325307 AAASQ9NRG9 546 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 SPG21Q9NZD8 308 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 STRIP2Q9ULQ0 834 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 PCDHB12Q9Y5F1 795 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 CTAGE9A4FU28 777 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 AP1G2O75843 785 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 OAZ2O95190 189 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 CYP1A2P05177 515 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 MAPRE1Q15691 268 aaKnown RBP10.58□□□□□ -0.72
HMGB3-201ENST00000325307 TAS1R1Q7RTX1 841 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 FAM35AQ86V20 835 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 SPATA2LQ8IUW3 424 aaPredicted RBP10.58□□□□□ -0.72
HMGB3-201ENST00000325307 GOLPH3Q9H4A6 298 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 TJP2Q9UDY2 1190 aa10.58□□□□□ -0.72
HMGB3-201ENST00000325307 ENC1O14682 589 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 FTCDO95954 541 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 SETSIPP0DME0 302 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 CPB1P15086 417 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 CA8P35219 290 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 DNA2P51530 1060 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 MAP3K7CLP57077 242 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 SNX16P57768 344 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 USP41Q3LFD5 358 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 RTP2Q5QGT7 225 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 OR6B2Q6IFH4 312 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 PMF1Q6P1K2 205 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 DCUN1D2Q6PH85 259 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 DCP1BQ8IZD4 617 aaKnown RBP10.57□□□□□ -0.72
HMGB3-201ENST00000325307 TPCN2Q8NHX9 752 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 RIN2Q8WYP3 895 aaPredicted RBP10.57□□□□□ -0.72
HMGB3-201ENST00000325307 RAD9AQ99638 391 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 RHOBTB2Q9BYZ6 727 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 MRPL47Q9HD33 250 aaKnown RBP10.57□□□□□ -0.72
HMGB3-201ENST00000325307 PARVAQ9NVD7 372 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 UVRAGQ9P2Y5 699 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 ANAPC7Q9UJX3 599 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 COG5Q9UP83 839 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 SCINQ9Y6U3 715 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 E5RJQ4 531 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 H7C4K7 107 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 ERBB2P04626 1255 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 NPR3P17342 541 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms