RNA–Protein interactions for RNA: ENST00000309660.9

PTPN2-201, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

TSL 1 (best) BASIC

Gene PTPN2, Length 3,467 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-201ENST00000309660 PKN2Q16513 984 aaKnown RBP12.12□□□□□ -0.47
PTPN2-201ENST00000309660 PPP1R15BQ5SWA1 713 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 MAP1SQ66K74 1059 aaPredicted RBP12.12□□□□□ -0.47
PTPN2-201ENST00000309660 SESTD1Q86VW0 696 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 XYLT1Q86Y38 959 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 SPATA18Q8TC71 538 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 PYROXD1Q8WU10 500 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 KLF6Q99612 283 aaPredicted RBP12.12□□□□□ -0.47
PTPN2-201ENST00000309660 MROH8Q9H579 483 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 USP18Q9UMW8 372 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 DNAJC25-GNG10A0A024R161 153 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 H3BRB1 525 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 P4HA1P13674 534 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 KDELR1P24390 212 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 GCLCP48506 637 aaPredicted RBP12.12□□□□□ -0.47
PTPN2-201ENST00000309660 SLC26A2P50443 739 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 YARSP54577 528 aaKnown RBP12.12□□□□□ -0.47
PTPN2-201ENST00000309660 ARHGAP1Q07960 439 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 EFTUD2Q15029 972 aaKnown RBP eCLIP12.12□□□□□ -0.477e-6■■■■■ 30.5
PTPN2-201ENST00000309660 LRRC38Q5VT99 294 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 ACOT1Q86TX2 421 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 UNC45BQ8IWX7 931 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 CCHCR1Q8TD31 782 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 ACAP3Q96P50 834 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 CXCL16Q9H2A7 254 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 TUT1Q9H6E5 874 aaKnown RBP12.12□□□□□ -0.47
PTPN2-201ENST00000309660 SLC40A1Q9NP59 571 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 TSPAN16Q9UKR8 245 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 WDR91A4D1P6 747 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 H7C0C1 242 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 ASAP2O43150 1006 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 CA4P22748 312 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 ATP5OP48047 213 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 SLC25A11Q02978 314 aaKnown RBP12.12□□□□□ -0.47
PTPN2-201ENST00000309660 PPIL2Q13356 520 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 OASLQ15646 514 aaKnown RBP12.12□□□□□ -0.47
PTPN2-201ENST00000309660 PPP6R3Q5H9R7 873 aaPredicted RBP12.12□□□□□ -0.47
PTPN2-201ENST00000309660 DARS2Q6PI48 645 aaKnown RBP12.12□□□□□ -0.47
PTPN2-201ENST00000309660 ARHGEF18Q6ZSZ5 1173 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 PNMA8AQ86V59 439 aaPredicted RBP12.12□□□□□ -0.47
PTPN2-201ENST00000309660 SPOCK2Q92563 424 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 LPIN3Q9BQK8 851 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 DPP3Q9NY33 737 aa12.12□□□□□ -0.47
PTPN2-201ENST00000309660 MCF2LO15068 1137 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 CILPO75339 1184 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 CPP00450 1065 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 KRT81Q14533 505 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 FAXCQ5TGI0 409 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 PALM2Q8IXS6 379 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 CCT6BQ92526 530 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 SETD4Q9NVD3 440 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 RDXP35241 583 aaKnown RBP12.11□□□□□ -0.47
PTPN2-201ENST00000309660 DNAJC3Q13217 504 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 LAMC2Q13753 1193 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 SEPT7Q16181 437 aaKnown RBP12.11□□□□□ -0.47
PTPN2-201ENST00000309660 DPY19L2Q6NUT2 758 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 ILDR2Q71H61 639 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 TRPM8Q7Z2W7 1104 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 TBC1D1Q86TI0 1168 aaPredicted RBP12.11□□□□□ -0.47
PTPN2-201ENST00000309660 GPRC5AQ8NFJ5 357 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 RXFP2Q8WXD0 754 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 TRABDQ9H4I3 376 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 PCDH9Q9HC56 1237 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 DNAH12Q6ZR08 3092 aa12.11□□□□□ -0.47
PTPN2-201ENST00000309660 TCRBV7S3A2A0A539 114 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 SNX3O60493 162 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 EPHX2P34913 555 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 GJA5P36382 358 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 COPS2P61201 443 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 TNFAIP2Q03169 654 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 SNAPC2Q13487 334 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 TNFAIP8L3Q5GJ75 292 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 RNASEH2BQ5TBB1 312 aaKnown RBP12.1□□□□□ -0.47
PTPN2-201ENST00000309660 SCUBE3Q8IX30 993 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 SMC6Q96SB8 1091 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 TRIM6Q9C030 488 aaPredicted RBP12.1□□□□□ -0.47
PTPN2-201ENST00000309660 ACTR5Q9H9F9 607 aaPredicted RBP12.1□□□□□ -0.47
PTPN2-201ENST00000309660 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.1□□□□□ -0.47
PTPN2-201ENST00000309660 CHMP2BQ9UQN3 213 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 BRCA1P38398 1863 aaKnown RBP12.1□□□□□ -0.47
PTPN2-201ENST00000309660 A0A1W2PPM1 405 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 PPEF2O14830 753 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 HCRTO43612 131 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 PRPSAP2O60256 369 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 NPTXRO95502 500 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 RPL22P35268 128 aaKnown RBP12.1□□□□□ -0.47
PTPN2-201ENST00000309660 MORF4L2Q15014 288 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 GOLGA7BQ2TAP0 167 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 C3orf62Q6ZUJ4 267 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 OR6B3Q8NGW1 331 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 BCO2Q9BYV7 579 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 MAF1Q9H063 256 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 SNTG2Q9NY99 539 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 XPO7Q9UIA9 1087 aaKnown RBP12.1□□□□□ -0.47
PTPN2-201ENST00000309660 GGA2Q9UJY4 613 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 USP15Q9Y4E8 981 aaPredicted RBP12.1□□□□□ -0.47
PTPN2-201ENST00000309660 FAM47DPA6NHR8 397 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 F5H423 210 aaPredicted RBP12.1□□□□□ -0.47
PTPN2-201ENST00000309660 SUN1O94901 812 aa12.1□□□□□ -0.47
PTPN2-201ENST00000309660 ITGAVP06756 1048 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms