RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 NRBF2Q96F24 287 aa19.29■□□□□ 0.68
PCDH1-201ENST00000287008 RUBCNLQ9H714 662 aa19.29■□□□□ 0.68
PCDH1-201ENST00000287008 TMEM131LA2VDJ0 1609 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 RNF103-CHMP3A0A140T963 221 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 SETSIPP0DME0 302 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 HSPA9P38646 679 aaKnown RBP19.28■□□□□ 0.68
PCDH1-201ENST00000287008 GEMP55040 296 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 RHBDL3P58872 404 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 MTM1Q13496 603 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 SLFN11Q7Z7L1 901 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 FAM131BQ86XD5 332 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 SLC13A5Q86YT5 568 aaPredicted RBP19.28■□□□□ 0.68
PCDH1-201ENST00000287008 VGLL2Q8N8G2 317 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 RBM12Q9NTZ6 932 aaKnown RBP19.28■□□□□ 0.68
PCDH1-201ENST00000287008 DDX43Q9NXZ2 648 aaKnown RBP19.28■□□□□ 0.68
PCDH1-201ENST00000287008 IPPQ9Y573 584 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 RNASEH1O60930 286 aaKnown RBP19.28■□□□□ 0.68
PCDH1-201ENST00000287008 SNRPAP09012 282 aaKnown RBP19.28■□□□□ 0.68
PCDH1-201ENST00000287008 MKRN4PQ13434 485 aaPredicted RBP19.28■□□□□ 0.68
PCDH1-201ENST00000287008 MDH1BQ5I0G3 518 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 C1orf146Q5VVC0 180 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 ERP44Q9BS26 406 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 SEMA6BQ9H3T3 888 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 SLITRK3O94933 977 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 MAGEA4P43358 317 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 MAP3K7CLP57077 242 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 PDE1CQ14123 709 aaPredicted RBP19.28■□□□□ 0.68
PCDH1-201ENST00000287008 PDCD2Q16342 344 aaPredicted RBP19.28■□□□□ 0.68
PCDH1-201ENST00000287008 TTLL9Q3SXZ7 439 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 C2CD6Q53TS8 623 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 ARMC6Q6NXE6 501 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 PIP4K2CQ8TBX8 421 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 SLC5A5Q92911 643 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 ITM2BQ9Y287 266 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 SALL3Q9BXA9 1300 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 ABCE1P61221 599 aaKnown RBP19.28■□□□□ 0.68
PCDH1-201ENST00000287008 PDK2Q15119 407 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 FBXL16Q8N461 479 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 FAM172AQ8WUF8 416 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 ACSF2Q96CM8 615 aaPredicted RBP19.28■□□□□ 0.68
PCDH1-201ENST00000287008 INTS13Q9NVM9 706 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 SLC25A13Q9UJS0 675 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 PCDHB5Q9Y5E4 795 aa19.28■□□□□ 0.68
PCDH1-201ENST00000287008 LZTS3O60299 673 aaPredicted RBP19.27■□□□□ 0.68
PCDH1-201ENST00000287008 CABYRO75952 493 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 BST2Q10589 180 aaKnown RBP19.27■□□□□ 0.68
PCDH1-201ENST00000287008 KYNUQ16719 465 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 CATSPERGQ6ZRH7 1159 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 CD274Q9NZQ7 290 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 TIMM13Q9Y5L4 95 aaPredicted RBP19.27■□□□□ 0.68
PCDH1-201ENST00000287008 PSTPIP1O43586 416 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 SUPT3HO75486 399 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 CD44P16070 742 aaKnown RBP19.27■□□□□ 0.68
PCDH1-201ENST00000287008 FDFT1P37268 417 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 OXCT1P55809 520 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 FIGNQ5HY92 759 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 PPIL6Q8IXY8 311 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 MKL1Q969V6 931 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 STAMBPL1Q96FJ0 436 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 CIPCQ9C0C6 399 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 VPS28Q9UK41 221 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 HEATR9A2RTY3 570 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 LSM8O95777 96 aaKnown RBP19.27■□□□□ 0.68
PCDH1-201ENST00000287008 TM4SF1P30408 202 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 STX3Q13277 289 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 USP38Q8NB14 1042 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 TPCN2Q8NHX9 752 aa19.27■□□□□ 0.68
PCDH1-201ENST00000287008 OTUB1Q96FW1 271 aaPredicted RBP19.27■□□□□ 0.68
PCDH1-201ENST00000287008 FAM95CA0A1B0GW59 222 aa19.27■□□□□ 0.67
PCDH1-201ENST00000287008 C2orf81A6NN90 581 aa19.27■□□□□ 0.67
PCDH1-201ENST00000287008 SP3Q02447 781 aa19.27■□□□□ 0.67
PCDH1-201ENST00000287008 PTGISQ16647 500 aa19.27■□□□□ 0.67
PCDH1-201ENST00000287008 RGMBQ6NW40 437 aa19.27■□□□□ 0.67
PCDH1-201ENST00000287008 BLOC1S5Q8TDH9 187 aa19.27■□□□□ 0.67
PCDH1-201ENST00000287008 TRPV2Q9Y5S1 764 aa19.27■□□□□ 0.67
PCDH1-201ENST00000287008 MYL4P12829 197 aa19.26■□□□□ 0.67
PCDH1-201ENST00000287008 AKAP5P24588 427 aa19.26■□□□□ 0.67
PCDH1-201ENST00000287008 KPNA1P52294 538 aaPredicted RBP19.26■□□□□ 0.67
PCDH1-201ENST00000287008 TMEM259Q4ZIN3 620 aa19.26■□□□□ 0.67
PCDH1-201ENST00000287008 FAM171A1Q5VUB5 890 aa19.26■□□□□ 0.67
PCDH1-201ENST00000287008 CHADLQ6NUI6 762 aa19.26■□□□□ 0.67
PCDH1-201ENST00000287008 ZSWIM1Q9BR11 485 aa19.26■□□□□ 0.67
PCDH1-201ENST00000287008 SPATA16Q9BXB7 569 aa19.26■□□□□ 0.67
PCDH1-201ENST00000287008 PCMTD2Q9NV79 361 aa19.26■□□□□ 0.67
PCDH1-201ENST00000287008 RRM1P23921 792 aa19.26■□□□□ 0.67
PCDH1-201ENST00000287008 TKTL1P51854 596 aa19.26■□□□□ 0.67
PCDH1-201ENST00000287008 PTK7Q13308 1070 aa19.26■□□□□ 0.67
PCDH1-201ENST00000287008 MRNIPQ6NTE8 343 aa19.26■□□□□ 0.67
PCDH1-201ENST00000287008 VSIG10LQ86VR7 867 aa19.26■□□□□ 0.67
PCDH1-201ENST00000287008 GTPBP10A4D1E9 387 aaKnown RBP19.26■□□□□ 0.67
PCDH1-201ENST00000287008 RHOBTB1O94844 696 aa19.26■□□□□ 0.67
PCDH1-201ENST00000287008 TIGD7Q6NT04 549 aaPredicted RBP19.26■□□□□ 0.67
PCDH1-201ENST00000287008 UBXN6Q9BZV1 441 aa19.26■□□□□ 0.67
PCDH1-201ENST00000287008 BARX2Q9UMQ3 279 aaPredicted RBP19.26■□□□□ 0.67
PCDH1-201ENST00000287008 SEC23IPQ9Y6Y8 1000 aaKnown RBP19.26■□□□□ 0.67
PCDH1-201ENST00000287008 ZMYM2Q9UBW7 1377 aa19.26■□□□□ 0.67
PCDH1-201ENST00000287008 ANGPT2O15123 496 aa19.25■□□□□ 0.67
PCDH1-201ENST00000287008 LGALS2P05162 132 aa19.25■□□□□ 0.67
PCDH1-201ENST00000287008 ITGA8P53708 1063 aa19.25■□□□□ 0.67
PCDH1-201ENST00000287008 NAA30Q147X3 362 aaPredicted RBP19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms