RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 PCYT2Q99447 389 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 TSC22D3Q99576 134 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 TBC1D10AQ9BXI6 508 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 UBE2TQ9NPD8 197 aaPredicted RBP10.87□□□□□ -0.67
UPF3B-201ENST00000276201 SEPT11Q9NVA2 429 aaKnown RBP10.87□□□□□ -0.67
UPF3B-201ENST00000276201 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.87□□□□□ -0.67
UPF3B-201ENST00000276201 ASIC3Q9UHC3 531 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 GTF2IRD1Q9UHL9 959 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 GGT7Q9UJ14 662 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 PHTF1Q9UMS5 762 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 LRCH1Q9Y2L9 728 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 SIGLEC16A6NMB1 481 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 EML1O00423 815 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 LGR5O75473 907 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 ZWINTO95229 277 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 MYBL1P10243 752 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 CYP2C9P11712 490 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 RAG1P15918 1043 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 KCNJ1P48048 391 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 PAPOLAP51003 745 aaKnown RBP10.86□□□□□ -0.67
UPF3B-201ENST00000276201 RAB27AP51159 221 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 ZRSR2Q15696 482 aaKnown RBP10.86□□□□□ -0.67
UPF3B-201ENST00000276201 KYNUQ16719 465 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 OTUD6AQ7L8S5 288 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 NOP9Q86U38 636 aaKnown RBP10.86□□□□□ -0.67
UPF3B-201ENST00000276201 FAM178BQ8IXR5 827 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 CCDC89Q8N998 374 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 GDAP1Q8TB36 358 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 SLC5A5Q92911 643 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 ERP27Q96DN0 273 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 CFAP57Q96MR6 1250 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 NUDCD1Q96RS6 583 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 MMADHCQ9H3L0 296 aaPredicted RBP10.86□□□□□ -0.67
UPF3B-201ENST00000276201 TMEM206Q9H813 350 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 UMODL1Q5DID0 1318 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 EMSYQ7Z589 1322 aa10.86□□□□□ -0.67
UPF3B-201ENST00000276201 ATG7O95352 703 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 TIMP1P01033 207 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 TRIM49P0CI25 452 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 TRIM49CP0CI26 452 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 MARK3P27448 753 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 HOXC8P31273 242 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 VHLP40337 213 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 FMO1Q01740 532 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 ACAD10Q6JQN1 1059 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 LONP2Q86WA8 852 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 ARHGEF19Q8IW93 802 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 TRIM11Q96F44 468 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 BICD1Q96G01 975 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 NACC1Q96RE7 527 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 LBHD1Q9BQE6 289 aaPredicted RBP10.85□□□□□ -0.67
UPF3B-201ENST00000276201 PPP1R12CQ9BZL4 782 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 ST6GALNAC4Q9H4F1 302 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 TBC1D22BQ9NU19 505 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 CPSF2Q9P2I0 782 aaKnown RBP10.85□□□□□ -0.67
UPF3B-201ENST00000276201 SLC24A2Q9UI40 661 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 TRIOBPQ9H2D6 2365 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 TMEM110-MUSTN1A8MSY1 372 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 PSMD10O75832 226 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 SLITRK3O94933 977 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 IL1BP01584 269 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 SUPT20HL2P0C7V6 817 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 SMIM10L2AP0DMW4 78 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 SMIM10L2BP0DMW5 78 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 GM2AP17900 193 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 ADSSP30520 456 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 CYP2C18P33260 490 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 PCK1P35558 622 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 VAMP7P51809 220 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 ZNF200P98182 395 aaPredicted RBP10.85□□□□□ -0.67
UPF3B-201ENST00000276201 CDR2Q01850 454 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 KLF1Q13351 362 aaPredicted RBP10.85□□□□□ -0.67
UPF3B-201ENST00000276201 PDCD2Q16342 344 aaPredicted RBP10.85□□□□□ -0.67
UPF3B-201ENST00000276201 DRICH1Q6PGQ1 229 aaPredicted RBP10.85□□□□□ -0.67
UPF3B-201ENST00000276201 ABHD15Q6UXT9 468 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 RIT2Q99578 217 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 YIPF3Q9GZM5 350 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 FAM192AQ9GZU8 254 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 HIPK3Q9H422 1215 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 RNPEPQ9H4A4 650 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 PAPOLBQ9NRJ5 636 aaKnown RBP10.85□□□□□ -0.67
UPF3B-201ENST00000276201 COQ4Q9Y3A0 265 aa10.85□□□□□ -0.67
UPF3B-201ENST00000276201 RANBP2P49792 3224 aaKnown RBP10.85□□□□□ -0.67
UPF3B-201ENST00000276201 IGKV6D-21A0A0A0MT36 114 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 RASA4BC9J798 803 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 PDLIM1O00151 329 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 CLDN3O15551 220 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 RASA4O43374 803 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 DNAJC6O75061 913 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 BMP8BP34820 402 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 PTDSS1P48651 473 aaKnown RBP10.84□□□□□ -0.67
UPF3B-201ENST00000276201 MFAP3P55082 362 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 MXRA7P84157 204 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 GSTA3Q16772 222 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 SLC5A9Q2M3M2 681 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 ZC2HC1CQ53FD0 456 aaPredicted RBP10.84□□□□□ -0.67
UPF3B-201ENST00000276201 C1orf220Q5T0J3 134 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 OR52E8Q6IFG1 317 aa10.84□□□□□ -0.67
UPF3B-201ENST00000276201 ZNF746Q6NUN9 644 aaPredicted RBP10.84□□□□□ -0.67
UPF3B-201ENST00000276201 SRRM1Q8IYB3 904 aaKnown RBP10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms