RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 TTC8Q8TAM2 541 aa10.42□□□□□ -0.74
VPS41-201ENST00000265745 KBTBD7Q8WVZ9 684 aa10.42□□□□□ -0.74
VPS41-201ENST00000265745 RUBCNQ92622 972 aa10.42□□□□□ -0.74
VPS41-201ENST00000265745 USP13Q92995 863 aaPredicted RBP10.42□□□□□ -0.74
VPS41-201ENST00000265745 CCDC127Q96BQ5 260 aa10.42□□□□□ -0.74
VPS41-201ENST00000265745 FUBP3Q96I24 572 aaKnown RBP eCLIP10.42□□□□□ -0.74
VPS41-201ENST00000265745 MYRFLQ96LU7 910 aa10.42□□□□□ -0.74
VPS41-201ENST00000265745 FAM83CQ9BQN1 747 aa10.42□□□□□ -0.74
VPS41-201ENST00000265745 IER2Q9BTL4 223 aa10.42□□□□□ -0.74
VPS41-201ENST00000265745 FAM126AQ9BYI3 521 aaPredicted RBP10.42□□□□□ -0.74
VPS41-201ENST00000265745 SMG9Q9H0W8 520 aaKnown RBP10.42□□□□□ -0.74
VPS41-201ENST00000265745 GZF1Q9H116 711 aaPredicted RBP10.42□□□□□ -0.74
VPS41-201ENST00000265745 SLC39A2Q9NP94 309 aa10.42□□□□□ -0.74
VPS41-201ENST00000265745 GKN1Q9NS71 199 aa10.42□□□□□ -0.74
VPS41-201ENST00000265745 THG1LQ9NWX6 298 aaKnown RBP10.42□□□□□ -0.74
VPS41-201ENST00000265745 CGNQ9P2M7 1197 aaKnown RBP10.42□□□□□ -0.74
VPS41-201ENST00000265745 UBE4BO95155 1302 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 LILRB5O75023 590 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 PDGFRBP09619 1106 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 FAM163BP0C2L3 166 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 TNNI1P19237 187 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 NDUFV2P19404 249 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 WARSP23381 471 aaKnown RBP10.41□□□□□ -0.74
VPS41-201ENST00000265745 DDX6P26196 483 aaKnown RBP eCLIP10.41□□□□□ -0.74
VPS41-201ENST00000265745 AVPR1AP37288 418 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 MAGEA11P43364 429 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 CXCL12P48061 93 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 CYP2J2P51589 502 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 QPCTQ16769 361 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 WDR44Q5JSH3 913 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 SPATA2LQ8IUW3 424 aaPredicted RBP10.41□□□□□ -0.74
VPS41-201ENST00000265745 GRAMD1CQ8IYS0 662 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 CEP57L1Q8IYX8 460 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 STKLD1Q8NE28 680 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 ZNF516Q92618 1163 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 MRPS31Q92665 395 aaKnown RBP10.41□□□□□ -0.74
VPS41-201ENST00000265745 TATDN2Q93075 761 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 TRMT2BQ96GJ1 504 aaKnown RBP10.41□□□□□ -0.74
VPS41-201ENST00000265745 PAGE5Q96GU1 130 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 FNBP1Q96RU3 617 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 CGRRF1Q99675 332 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 SYT15Q9BQS2 421 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 GDPD2Q9HCC8 539 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 CRTAC1Q9NQ79 661 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 TDP1Q9NUW8 608 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 UXTQ9UBK9 157 aaPredicted RBP10.41□□□□□ -0.74
VPS41-201ENST00000265745 SERTAD1Q9UHV2 236 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 CDH9Q9ULB4 789 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 MAGED2Q9UNF1 606 aaPredicted RBP10.41□□□□□ -0.74
VPS41-201ENST00000265745 CCL26Q9Y258 94 aa10.41□□□□□ -0.74
VPS41-201ENST00000265745 OTOGLQ3ZCN5 2332 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 OTOL1A6NHN0 477 aaPredicted RBP10.4□□□□□ -0.74
VPS41-201ENST00000265745 ACTN4O43707 911 aaKnown RBP10.4□□□□□ -0.74
VPS41-201ENST00000265745 KLRC4O43908 158 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 TACC1O75410 805 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 TADA3O75528 432 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 CMA1P23946 247 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 GNL1P36915 607 aaPredicted RBP10.4□□□□□ -0.74
VPS41-201ENST00000265745 CCR3P51677 355 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 NRLP54845 237 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 PSMC1P62191 440 aaKnown RBP10.4□□□□□ -0.74
VPS41-201ENST00000265745 STK4Q13043 487 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 CCINQ13939 588 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 PPP2R5DQ14738 602 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 MAPRE1Q15691 268 aaKnown RBP10.4□□□□□ -0.74
VPS41-201ENST00000265745 ITPRIPL2Q3MIP1 535 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 DGKKQ5KSL6 1271 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 VSTM1Q6UX27 236 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 C4orf50Q6ZRC1 276 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 SPEM1Q8N4L4 309 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 DCLK2Q8N568 766 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 GOLGA5Q8TBA6 731 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 TMEM174Q8WUU8 243 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 CYP2S1Q96SQ9 504 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 MMS19Q96T76 1030 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 EPC1Q9H2F5 836 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 RBM12Q9NTZ6 932 aaKnown RBP10.4□□□□□ -0.74
VPS41-201ENST00000265745 DMAC2Q9NW81 257 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 MAGEC2Q9UBF1 373 aaPredicted RBP10.4□□□□□ -0.74
VPS41-201ENST00000265745 ZDHHC9Q9Y397 364 aa10.4□□□□□ -0.74
VPS41-201ENST00000265745 EXOC3O60645 756 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 STAU1O95793 577 aaKnown RBP10.39□□□□□ -0.75
VPS41-201ENST00000265745 BDNFP23560 247 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 CLDN10P78369 228 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 SATB1Q01826 763 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 RUNX3Q13761 415 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 LRRC32Q14392 662 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 ZNF268Q14587 947 aaPredicted RBP10.39□□□□□ -0.75
VPS41-201ENST00000265745 PON2Q15165 354 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 WDR72Q3MJ13 1102 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 SCN4BQ8IWT1 228 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 SYNPOQ8N3V7 929 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 RIN3Q8TB24 985 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 MYCBPAPQ8TBZ2 947 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 PLEKHO2Q8TD55 490 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 MYLPFQ96A32 169 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 PCED1BQ96HM7 432 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 CHAMP1Q96JM3 812 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 SPATA17Q96L03 361 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 CEP295NLQ96MC4 621 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms