RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PRG3Q9Y2Y8 225 aaPredicted RBP17.38■□□□□ 0.37
USP4-201ENST00000265560 IL1R2P27930 398 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 BRD3Q15059 726 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 TTC27Q6P3X3 843 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 FAM126BQ8IXS8 530 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 SLC43A3Q8NBI5 491 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 CASKIN2Q8WXE0 1202 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 MAGOHBQ96A72 148 aaKnown RBP17.38■□□□□ 0.37
USP4-201ENST00000265560 HAUS1Q96CS2 278 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 CFAP57Q96MR6 1250 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 SLC38A7Q9NVC3 462 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 SIGLEC16A6NMB1 481 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 ZNF623O75123 536 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 DDHD2O94830 711 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 TFE3P19532 575 aaPredicted RBP17.38■□□□□ 0.37
USP4-201ENST00000265560 PBX3P40426 434 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 FAM26DQ5JW98 314 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 CLLU1OSQ5K130 101 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 SLC35F5Q8WV83 523 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 RAPGEF5Q92565 580 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 MED10Q9BTT4 135 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 SAGE1Q9NXZ1 904 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 DNAJB4Q9UDY4 337 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 STRIP2Q9ULQ0 834 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 R3HDM2Q9Y2K5 976 aaKnown RBP17.38■□□□□ 0.37
USP4-201ENST00000265560 FRMPD3Q5JV73 1810 aa17.38■□□□□ 0.37
USP4-201ENST00000265560 PAPSS1O43252 624 aaPredicted RBP17.37■□□□□ 0.37
USP4-201ENST00000265560 FAM153BP0C7A2 387 aa17.37■□□□□ 0.37
USP4-201ENST00000265560 CTNNA2P26232 953 aa17.37■□□□□ 0.37
USP4-201ENST00000265560 NDUFV1P49821 464 aa17.37■□□□□ 0.37
USP4-201ENST00000265560 CBX1P83916 185 aa17.37■□□□□ 0.37
USP4-201ENST00000265560 FAM153CQ494X1 144 aa17.37■□□□□ 0.37
USP4-201ENST00000265560 WDR93Q6P2C0 686 aa17.37■□□□□ 0.37
USP4-201ENST00000265560 FUKQ8N0W3 1084 aa17.37■□□□□ 0.37
USP4-201ENST00000265560 IPO4Q8TEX9 1081 aaKnown RBP17.37■□□□□ 0.37
USP4-201ENST00000265560 FAXDC2Q96IV6 333 aa17.37■□□□□ 0.37
USP4-201ENST00000265560 KCNK16Q96T55 309 aa17.37■□□□□ 0.37
USP4-201ENST00000265560 FUT8Q9BYC5 575 aa17.37■□□□□ 0.37
USP4-201ENST00000265560 PAK6Q9NQU5 681 aaPredicted RBP17.37■□□□□ 0.37
USP4-201ENST00000265560 FAM153AQ9UHL3 310 aa17.37■□□□□ 0.37
USP4-201ENST00000265560 PKDCCQ504Y2 493 aa17.37■□□□□ 0.37
USP4-201ENST00000265560 RHOT1Q8IXI2 618 aa17.37■□□□□ 0.37
USP4-201ENST00000265560 TMEM209Q96SK2 561 aa17.37■□□□□ 0.37
USP4-201ENST00000265560 CRTAC1Q9NQ79 661 aa17.37■□□□□ 0.37
USP4-201ENST00000265560 TMEM30AQ9NV96 361 aa17.37■□□□□ 0.37
USP4-201ENST00000265560 SAE1Q9UBE0 346 aaPredicted RBP17.37■□□□□ 0.37
USP4-201ENST00000265560 C9IYK1 514 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 PDGFRAP16234 1089 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 PTPN1P18031 435 aaKnown RBP17.36■□□□□ 0.37
USP4-201ENST00000265560 CACNA2D1P54289 1103 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 HLTFQ14527 1009 aaKnown RBP eCLIP17.36■□□□□ 0.37
USP4-201ENST00000265560 PRUNE1Q86TP1 453 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 UNC93AQ86WB7 457 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 RXFP2Q8WXD0 754 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 CHST7Q9NS84 486 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.36■□□□□ 0.37
USP4-201ENST00000265560 LRRD1A4D1F6 860 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 DNM1LO00429 736 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 DAPK3O43293 454 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 LRCH4O75427 683 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 CD48P09326 243 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 SELPP16109 830 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 CYP2C18P33260 490 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 SLC1A1P43005 524 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 CDK7P50613 346 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 ATXN1P54253 815 aaKnown RBP17.36■□□□□ 0.37
USP4-201ENST00000265560 MAP3K7CLP57077 242 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 TRIP13Q15645 432 aaPredicted RBP17.36■□□□□ 0.37
USP4-201ENST00000265560 SCYL2Q6P3W7 929 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 MFSD7Q6UXD7 560 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 PAQR9Q6ZVX9 377 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 ZNF598Q86UK7 904 aaKnown RBP17.36■□□□□ 0.37
USP4-201ENST00000265560 B3GALT6Q96L58 329 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 KIAA1257Q9ULG3 409 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 TARSL2A2RTX5 802 aaKnown RBP17.36■□□□□ 0.37
USP4-201ENST00000265560 KRT1P04264 644 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 DYNLT1P63172 113 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 RNASELQ05823 741 aaKnown RBP17.36■□□□□ 0.37
USP4-201ENST00000265560 SLC24A5Q71RS6 500 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 CRYBG2Q8N1P7 616 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 HSPH1Q92598 858 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 MAGEB5Q9BZ81 275 aa17.36■□□□□ 0.37
USP4-201ENST00000265560 ERLIN1O75477 346 aa17.35■□□□□ 0.37
USP4-201ENST00000265560 UPP2O95045 317 aa17.35■□□□□ 0.37
USP4-201ENST00000265560 TUBB4BP68371 445 aa17.35■□□□□ 0.37
USP4-201ENST00000265560 ZNF268Q14587 947 aaPredicted RBP17.35■□□□□ 0.37
USP4-201ENST00000265560 SND1Q7KZF4 910 aaKnown RBP eCLIP17.35■□□□□ 0.37
USP4-201ENST00000265560 NGRNQ9NPE2 291 aaKnown RBP17.35■□□□□ 0.37
USP4-201ENST00000265560 RGS18Q9NS28 235 aa17.35■□□□□ 0.37
USP4-201ENST00000265560 SYNJ2BP-COX16A0A087WUM0 186 aa17.35■□□□□ 0.37
USP4-201ENST00000265560 OR1G1P47890 313 aa17.35■□□□□ 0.37
USP4-201ENST00000265560 RAB27AP51159 221 aa17.35■□□□□ 0.37
USP4-201ENST00000265560 SIX1Q15475 284 aaPredicted RBP17.35■□□□□ 0.37
USP4-201ENST00000265560 ODF2Q5BJF6 829 aa17.35■□□□□ 0.37
USP4-201ENST00000265560 GLB1LQ6UWU2 654 aa17.35■□□□□ 0.37
USP4-201ENST00000265560 CD300LGQ6UXG3 332 aa17.35■□□□□ 0.37
USP4-201ENST00000265560 B4GALNT4Q76KP1 1039 aa17.35■□□□□ 0.37
USP4-201ENST00000265560 PIGZQ86VD9 579 aa17.35■□□□□ 0.37
USP4-201ENST00000265560 TOP6BLQ8N6T0 577 aa17.35■□□□□ 0.37
USP4-201ENST00000265560 ANKRD52Q8NB46 1076 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms