RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 Rexo4Q6PAQ4 432 aaKnown RBP17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Nipal4Q8BZF2 406 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Cfap36Q8C6E0 343 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Abhd8Q8R0P8 439 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Ccdc97Q9DBT3 340 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Ube4bQ9ES00 1173 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Abt1Q9QYL7 269 aaKnown RBP17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Lcn6A2AJB9 181 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Smok3aC0HKC8 504 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Smok3bC0HKC9 504 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Gm6685D3YYP3 228 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Npas2P97460 816 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 GsapQ3TCV3 858 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Pcmtd2Q8BHD8 359 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Tspan8Q8R3G9 235 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Cd300ldQ8VCH2 221 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Gtf2ird2Q99NI3 936 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Mrpl2Q9D773 306 aaKnown RBP17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Ybx3Q9JKB3 361 aaKnown RBP17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Col4a3Q9QZS0 1669 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Sf3b1Q99NB9 1304 aaKnown RBP17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Arhgef37A1IGU4 676 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 EloblA6PWE0 161 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Adamts6D3Z1A5 1117 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Gm1661E9Q963 441 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Pdzd7E9Q9W7 1021 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Erbb2P70424 1256 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Serpina1eQ00898 413 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Oog4Q4G0C7 502 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Exoc3l1Q8BI71 739 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Dync1li1Q8R1Q8 523 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Def8Q99J78 448 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Zfp623Q9CY99 499 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Nde1Q9CZA6 344 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Ankef1Q9D2J7 775 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 C1qtnf1Q9QXP7 281 aa17.63■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Sbno2Q7TNB8 1349 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Flvcr1B2RXV4 560 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Psmc5P62196 406 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Olfm3P63056 478 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Prr18Q6PAN7 307 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 HltfQ6PCN7 1003 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Fam181bQ80VF6 417 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Uba6Q8C7R4 1053 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Gnl3Q8CI11 538 aaKnown RBP17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Adgrg2Q8CJ12 1009 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Gprc5cQ8K3J9 440 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Tmem206Q9D771 350 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 DgkhD3YXJ0 1156 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Ift81O35594 676 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Axin1O35625 863 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Slc7a6osQ7TPE5 306 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 TbckQ8BM85 762 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 4921504E06RikQ8CET2 560 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Smyd2Q8R5A0 433 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Batf3Q9D275 118 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Ap2b1Q9DBG3 937 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Ddx24Q9ESV0 857 aaKnown RBP17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Gtf2iQ9ESZ8 998 aaKnown RBP17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 PyglQ9ET01 850 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Copg2Q9QXK3 871 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Trpc2Q9R244 1172 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Crlf3Q9Z2L7 442 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Btaf1E9QAE3 1848 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Brwd3A2AHJ4 1799 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Rgs2O08849 211 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Tlr8P58682 1032 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Mier3Q3UHF3 551 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Abi3bpQ59IW6 1179 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Hif1aQ61221 836 aaKnown RBP17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Gemin4Q6P6L6 1058 aaKnown RBP17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Sh3d21Q7TSG5 549 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Nipa1Q8BHK1 323 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Znf24Q91VN1 368 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Pcdhga10Q91XY9 930 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Atp6v1g1Q9CR51 118 aa17.62■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Usp46P62069 366 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 HpcaP84075 193 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Q8BZE1 841 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Atxn7Q8R4I1 867 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Pcdhb5Q91XZ5 792 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Chst12Q99LL3 419 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 PompQ9CQT5 141 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Fndc3c1Q6DFV6 1356 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 DohhA0A1Y7VJ29 135 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Kpna7C0LLJ0 499 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 C7D3YXF5 845 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Matn1P51942 500 aaKnown RBP17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 JrkQ60976 557 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Hmgb4Q6P8W9 181 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Tor4aQ8BH02 426 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 PygbQ8CI94 843 aaKnown RBP17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Gm11985A0A1B0GS61 206 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Stmn2P55821 179 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Scaf4Q6PFF0 1209 aaKnown RBP17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Gabbr2Q80T41 940 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Tmem74Q8BQU7 305 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Kcnv2Q8CFS6 562 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Sorcs3Q8VI51 1219 aa17.61■□□□□ 0.41
Ctcf-201ENSMUST00000005841 Asap1Q9QWY8 1147 aa17.61■□□□□ 0.41
Retrieved 100 of 22,080 RNA–protein pairs in 17.3 ms