RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 PRPHP41219 470 aa17.66■□□□□ 0.42
CLN3-264ENST00000637985 GFPT1Q06210 699 aaPredicted RBP17.66■□□□□ 0.42
CLN3-264ENST00000637985 MTF1Q14872 753 aa17.66■□□□□ 0.42
CLN3-264ENST00000637985 TRIP6Q15654 476 aaKnown RBP17.66■□□□□ 0.42
CLN3-264ENST00000637985 TAF12Q16514 161 aa17.66■□□□□ 0.42
CLN3-264ENST00000637985 DUOXA1Q1HG43 343 aa17.66■□□□□ 0.42
CLN3-264ENST00000637985 SEZ6Q53EL9 994 aa17.66■□□□□ 0.42
CLN3-264ENST00000637985 RILPL1Q5EBL4 403 aa17.66■□□□□ 0.42
CLN3-264ENST00000637985 TMEM92Q6UXU6 159 aa17.66■□□□□ 0.42
CLN3-264ENST00000637985 MON1AQ86VX9 555 aa17.66■□□□□ 0.42
CLN3-264ENST00000637985 CEP76Q8TAP6 659 aa17.66■□□□□ 0.42
CLN3-264ENST00000637985 GIPC2Q8TF65 315 aa17.66■□□□□ 0.42
CLN3-264ENST00000637985 ATP2A3Q93084 1043 aa17.66■□□□□ 0.42
CLN3-264ENST00000637985 ZBTB45Q96K62 511 aaPredicted RBP17.66■□□□□ 0.42
CLN3-264ENST00000637985 SPACA7Q96KW9 195 aa17.66■□□□□ 0.42
CLN3-264ENST00000637985 DUS2Q9NX74 493 aaKnown RBP17.66■□□□□ 0.42
CLN3-264ENST00000637985 ARHGAP28Q9P2N2 729 aa17.66■□□□□ 0.42
CLN3-264ENST00000637985 ATXN2Q99700 1313 aaKnown RBP17.66■□□□□ 0.42
CLN3-264ENST00000637985 ALDH1A2O94788 518 aa17.65■□□□□ 0.42
CLN3-264ENST00000637985 SERPINF2P08697 491 aa17.65■□□□□ 0.42
CLN3-264ENST00000637985 HARSP12081 509 aaKnown RBP17.65■□□□□ 0.42
CLN3-264ENST00000637985 CYP3A5P20815 502 aa17.65■□□□□ 0.42
CLN3-264ENST00000637985 SEC13P55735 322 aa17.65■□□□□ 0.42
CLN3-264ENST00000637985 PEX3P56589 373 aa17.65■□□□□ 0.42
CLN3-264ENST00000637985 SPAG1Q07617 926 aa17.65■□□□□ 0.42
CLN3-264ENST00000637985 ECM1Q16610 540 aa17.65■□□□□ 0.42
CLN3-264ENST00000637985 EML3Q32P44 896 aa17.65■□□□□ 0.42
CLN3-264ENST00000637985 MAP7D1Q3KQU3 841 aa17.65■□□□□ 0.42
CLN3-264ENST00000637985 SLC39A12Q504Y0 691 aa17.65■□□□□ 0.42
CLN3-264ENST00000637985 LMBRD2Q68DH5 695 aaPredicted RBP17.65■□□□□ 0.42
CLN3-264ENST00000637985 MCTP1Q6DN14 999 aa17.65■□□□□ 0.42
CLN3-264ENST00000637985 MINDY1Q8N5J2 469 aa17.65■□□□□ 0.42
CLN3-264ENST00000637985 CCDC33Q8N5R6 958 aa17.65■□□□□ 0.42
CLN3-264ENST00000637985 ZCWPW1Q9H0M4 648 aa17.65■□□□□ 0.42
CLN3-264ENST00000637985 PLEKHA5Q9HAU0 1116 aa17.65■□□□□ 0.42
CLN3-264ENST00000637985 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.65■□□□□ 0.42
CLN3-264ENST00000637985 DNAAF2Q9NVR5 837 aaKnown RBP17.65■□□□□ 0.42
CLN3-264ENST00000637985 DKK4Q9UBT3 224 aa17.65■□□□□ 0.42
CLN3-264ENST00000637985 KIAA1024Q9UPX6 916 aa17.65■□□□□ 0.42
CLN3-264ENST00000637985 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.65■□□□□ 0.42
CLN3-264ENST00000637985 CYSRT1A8MQ03 144 aa17.64■□□□□ 0.41
CLN3-264ENST00000637985 H3BQV1 296 aa17.64■□□□□ 0.41
CLN3-264ENST00000637985 CD2BP2O95400 341 aaKnown RBP17.64■□□□□ 0.41
CLN3-264ENST00000637985 FTH1P19P0C7X4 201 aa17.64■□□□□ 0.41
CLN3-264ENST00000637985 GJB2P29033 226 aa17.64■□□□□ 0.41
CLN3-264ENST00000637985 CDR1P51861 262 aa17.64■□□□□ 0.41
CLN3-264ENST00000637985 FAM160A1Q05DH4 1040 aa17.64■□□□□ 0.41
CLN3-264ENST00000637985 DMP1Q13316 513 aaPredicted RBP17.64■□□□□ 0.41
CLN3-264ENST00000637985 ZNF77Q15935 545 aa17.64■□□□□ 0.41
CLN3-264ENST00000637985 KRT79Q5XKE5 535 aa17.64■□□□□ 0.41
CLN3-264ENST00000637985 DTHD1Q6ZMT9 781 aa17.64■□□□□ 0.41
CLN3-264ENST00000637985 TTC30AQ86WT1 665 aa17.64■□□□□ 0.41
CLN3-264ENST00000637985 PNPLA1Q8N8W4 532 aa17.64■□□□□ 0.41
CLN3-264ENST00000637985 SNX29Q8TEQ0 813 aa17.64■□□□□ 0.41
CLN3-264ENST00000637985 WHAMMQ8TF30 809 aa17.64■□□□□ 0.41
CLN3-264ENST00000637985 SENP8Q96LD8 212 aa17.64■□□□□ 0.41
CLN3-264ENST00000637985 CAMK1GQ96NX5 476 aa17.64■□□□□ 0.41
CLN3-264ENST00000637985 BHMT2Q9H2M3 363 aa17.64■□□□□ 0.41
CLN3-264ENST00000637985 UBQLN1Q9UMX0 589 aaKnown RBP17.64■□□□□ 0.41
CLN3-264ENST00000637985 WNT6Q9Y6F9 365 aa17.64■□□□□ 0.41
CLN3-264ENST00000637985 TENM4Q6N022 2769 aa17.63■□□□□ 0.41
CLN3-264ENST00000637985 PTPRBP23467 1997 aa17.63■□□□□ 0.41
CLN3-264ENST00000637985 TTC26A0AVF1 554 aa17.63■□□□□ 0.41
CLN3-264ENST00000637985 SH3BP5O60239 455 aa17.63■□□□□ 0.41
CLN3-264ENST00000637985 TOM1L1O75674 476 aa17.63■□□□□ 0.41
CLN3-264ENST00000637985 CXCL8P10145 99 aa17.63■□□□□ 0.41
CLN3-264ENST00000637985 HAPLN1P10915 354 aaPredicted RBP17.63■□□□□ 0.41
CLN3-264ENST00000637985 ODC1P11926 461 aa17.63■□□□□ 0.41
CLN3-264ENST00000637985 OPRD1P41143 372 aa17.63■□□□□ 0.41
CLN3-264ENST00000637985 IFNAR2P48551 515 aa17.63■□□□□ 0.41
CLN3-264ENST00000637985 LILRA4P59901 499 aa17.63■□□□□ 0.41
CLN3-264ENST00000637985 MRPS21P82921 87 aaKnown RBP17.63■□□□□ 0.41
CLN3-264ENST00000637985 SLC14A1Q13336 389 aa17.63■□□□□ 0.41
CLN3-264ENST00000637985 NOLC1Q14978 699 aaKnown RBP eCLIP17.63■□□□□ 0.41
CLN3-264ENST00000637985 OR2I1PQ8NGU4 316 aa17.63■□□□□ 0.41
CLN3-264ENST00000637985 C2orf15Q8WU43 125 aaKnown RBP17.63■□□□□ 0.41
CLN3-264ENST00000637985 MRPS31Q92665 395 aaKnown RBP17.63■□□□□ 0.41
CLN3-264ENST00000637985 DDX19AQ9NUU7 478 aaKnown RBP17.63■□□□□ 0.41
CLN3-264ENST00000637985 CIZ1Q9ULV3 898 aaPredicted RBP17.63■□□□□ 0.41
CLN3-264ENST00000637985 DNM3Q9UQ16 869 aa17.63■□□□□ 0.41
CLN3-264ENST00000637985 SMC3Q9UQE7 1217 aa17.63■□□□□ 0.41
CLN3-264ENST00000637985 RBM19Q9Y4C8 960 aaKnown RBP17.63■□□□□ 0.41
CLN3-264ENST00000637985 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.63■□□□□ 0.41
CLN3-264ENST00000637985 TSC2P49815 1807 aa17.63■□□□□ 0.41
CLN3-264ENST00000637985 CEP192Q8TEP8 1941 aa17.62■□□□□ 0.41
CLN3-264ENST00000637985 ARHGAP33O14559 1287 aa17.62■□□□□ 0.41
CLN3-264ENST00000637985 PPEF2O14830 753 aa17.62■□□□□ 0.41
CLN3-264ENST00000637985 C1QL1O75973 258 aa17.62■□□□□ 0.41
CLN3-264ENST00000637985 PRB1P04280 392 aa17.62■□□□□ 0.41
CLN3-264ENST00000637985 CHRM1P11229 460 aaPredicted RBP17.62■□□□□ 0.41
CLN3-264ENST00000637985 GUCY2FP51841 1108 aa17.62■□□□□ 0.41
CLN3-264ENST00000637985 NR1H3Q13133 447 aa17.62■□□□□ 0.41
CLN3-264ENST00000637985 BYSLQ13895 437 aaKnown RBP17.62■□□□□ 0.41
CLN3-264ENST00000637985 LRRTM3Q86VH5 581 aa17.62■□□□□ 0.41
CLN3-264ENST00000637985 EFCAB13Q8IY85 973 aa17.62■□□□□ 0.41
CLN3-264ENST00000637985 DAW1Q8N136 415 aa17.62■□□□□ 0.41
CLN3-264ENST00000637985 SPPL2BQ8TCT7 592 aa17.62■□□□□ 0.41
CLN3-264ENST00000637985 UBL7Q96S82 380 aaPredicted RBP17.62■□□□□ 0.41
CLN3-264ENST00000637985 KMT5AQ9NQR1 393 aa17.62■□□□□ 0.41
CLN3-264ENST00000637985 ANK1P16157 1881 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms