RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 SYT13Q7L8C5 426 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 KIAA1958Q8N8K9 716 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 ZSWIM2Q8NEG5 633 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 OSCP1Q8WVF1 389 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 FUBP3Q96I24 572 aaKnown RBP eCLIP17.67■□□□□ 0.42
CLN3-255ENST00000637100 EPSTI1Q96J88 318 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 CEP295NLQ96MC4 621 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 PI4K2AQ9BTU6 479 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 ZHX3Q9H4I2 956 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 ECT2Q9H8V3 914 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 EML5Q05BV3 1969 aa17.67■□□□□ 0.42
CLN3-255ENST00000637100 MYMKA6NI61 221 aa17.66■□□□□ 0.42
CLN3-255ENST00000637100 AXIN1O15169 862 aa17.66■□□□□ 0.42
CLN3-255ENST00000637100 RNF40O75150 1001 aa17.66■□□□□ 0.42
CLN3-255ENST00000637100 PRPF40AO75400 957 aaKnown RBP17.66■□□□□ 0.42
CLN3-255ENST00000637100 MAGEA11P43364 429 aa17.66■□□□□ 0.42
CLN3-255ENST00000637100 CDR1P51861 262 aa17.66■□□□□ 0.42
CLN3-255ENST00000637100 PLK5Q496M5 336 aa17.66■□□□□ 0.42
CLN3-255ENST00000637100 DPH6Q7L8W6 267 aa17.66■□□□□ 0.42
CLN3-255ENST00000637100 OSTM1Q86WC4 334 aa17.66■□□□□ 0.42
CLN3-255ENST00000637100 TOP6BLQ8N6T0 577 aa17.66■□□□□ 0.42
CLN3-255ENST00000637100 P2RY13Q9BPV8 354 aa17.66■□□□□ 0.42
CLN3-255ENST00000637100 DUSP15Q9H1R2 295 aaPredicted RBP17.66■□□□□ 0.42
CLN3-255ENST00000637100 SIX4Q9UIU6 781 aa17.66■□□□□ 0.42
CLN3-255ENST00000637100 FBXO2Q9UK22 296 aaPredicted RBP17.66■□□□□ 0.42
CLN3-255ENST00000637100 ITGA11Q9UKX5 1188 aa17.66■□□□□ 0.42
CLN3-255ENST00000637100 AGAP1Q9UPQ3 857 aa17.66■□□□□ 0.42
CLN3-255ENST00000637100 SLC8A2Q9UPR5 921 aa17.66■□□□□ 0.42
CLN3-255ENST00000637100 SMC3Q9UQE7 1217 aa17.66■□□□□ 0.42
CLN3-255ENST00000637100 SRPRBQ9Y5M8 271 aaKnown RBP17.66■□□□□ 0.42
CLN3-255ENST00000637100 TCHHQ07283 1943 aa17.66■□□□□ 0.42
CLN3-255ENST00000637100 HUS1O60921 280 aa17.65■□□□□ 0.42
CLN3-255ENST00000637100 ITGB3P05106 788 aa17.65■□□□□ 0.42
CLN3-255ENST00000637100 CYP2F1P24903 491 aa17.65■□□□□ 0.42
CLN3-255ENST00000637100 POLR2BP30876 1174 aaKnown RBP17.65■□□□□ 0.42
CLN3-255ENST00000637100 LHX1P48742 406 aa17.65■□□□□ 0.42
CLN3-255ENST00000637100 PXNP49023 591 aaPredicted RBP17.65■□□□□ 0.42
CLN3-255ENST00000637100 MTF1Q14872 753 aa17.65■□□□□ 0.42
CLN3-255ENST00000637100 DDR2Q16832 855 aa17.65■□□□□ 0.42
CLN3-255ENST00000637100 EML3Q32P44 896 aa17.65■□□□□ 0.42
CLN3-255ENST00000637100 CACTINQ8WUQ7 758 aaKnown RBP17.65■□□□□ 0.42
CLN3-255ENST00000637100 EXOC4Q96A65 974 aa17.65■□□□□ 0.42
CLN3-255ENST00000637100 ACCSQ96QU6 501 aa17.65■□□□□ 0.42
CLN3-255ENST00000637100 SLC22A12Q96S37 553 aa17.65■□□□□ 0.42
CLN3-255ENST00000637100 FAM213AQ9BRX8 229 aa17.65■□□□□ 0.42
CLN3-255ENST00000637100 LSM14BQ9BX40 385 aaKnown RBP17.65■□□□□ 0.42
CLN3-255ENST00000637100 DDX43Q9NXZ2 648 aaKnown RBP17.65■□□□□ 0.42
CLN3-255ENST00000637100 GTF3C4Q9UKN8 822 aa17.65■□□□□ 0.42
CLN3-255ENST00000637100 EXOC7Q9UPT5 735 aa17.65■□□□□ 0.42
CLN3-255ENST00000637100 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.65■□□□□ 0.42
CLN3-255ENST00000637100 CHD6Q8TD26 2715 aa17.65■□□□□ 0.42
CLN3-255ENST00000637100 USP17L7P0C7H9 530 aa17.64■□□□□ 0.41
CLN3-255ENST00000637100 PFKLP17858 780 aa17.64■□□□□ 0.41
CLN3-255ENST00000637100 MYL7Q01449 175 aa17.64■□□□□ 0.41
CLN3-255ENST00000637100 ALCAMQ13740 583 aa17.64■□□□□ 0.41
CLN3-255ENST00000637100 SOWAHAQ2M3V2 549 aa17.64■□□□□ 0.41
CLN3-255ENST00000637100 N4BP2L1Q5TBK1 243 aaPredicted RBP17.64■□□□□ 0.41
CLN3-255ENST00000637100 STPG1Q5TH74 334 aa17.64■□□□□ 0.41
CLN3-255ENST00000637100 NAIF1Q69YI7 327 aaPredicted RBP17.64■□□□□ 0.41
CLN3-255ENST00000637100 CC2D1AQ6P1N0 951 aaPredicted RBP17.64■□□□□ 0.41
CLN3-255ENST00000637100 DYMQ7RTS9 669 aa17.64■□□□□ 0.41
CLN3-255ENST00000637100 CPA6Q8N4T0 437 aa17.64■□□□□ 0.41
CLN3-255ENST00000637100 SPATA17Q96L03 361 aa17.64■□□□□ 0.41
CLN3-255ENST00000637100 CYP2S1Q96SQ9 504 aa17.64■□□□□ 0.41
CLN3-255ENST00000637100 MRPL44Q9H9J2 332 aaKnown RBP17.64■□□□□ 0.41
CLN3-255ENST00000637100 VPS45Q9NRW7 570 aa17.64■□□□□ 0.41
CLN3-255ENST00000637100 PCDHB13Q9Y5F0 798 aa17.64■□□□□ 0.41
CLN3-255ENST00000637100 SDK1Q7Z5N4 2213 aa17.64■□□□□ 0.41
CLN3-255ENST00000637100 CHRM1P11229 460 aaPredicted RBP17.63■□□□□ 0.41
CLN3-255ENST00000637100 PCSK1P29120 753 aa17.63■□□□□ 0.41
CLN3-255ENST00000637100 MPLP40238 635 aa17.63■□□□□ 0.41
CLN3-255ENST00000637100 CASP5P51878 434 aa17.63■□□□□ 0.41
CLN3-255ENST00000637100 RBP5P82980 135 aa17.63■□□□□ 0.41
CLN3-255ENST00000637100 TFAMQ00059 246 aaKnown RBP17.63■□□□□ 0.41
CLN3-255ENST00000637100 CUL4AQ13619 759 aa17.63■□□□□ 0.41
CLN3-255ENST00000637100 ST3GAL2Q16842 350 aa17.63■□□□□ 0.41
CLN3-255ENST00000637100 GAB4Q2WGN9 574 aa17.63■□□□□ 0.41
CLN3-255ENST00000637100 AASDHQ4L235 1098 aaPredicted RBP17.63■□□□□ 0.41
CLN3-255ENST00000637100 SDHAF4Q5VUM1 108 aa17.63■□□□□ 0.41
CLN3-255ENST00000637100 IL31Q6EBC2 164 aa17.63■□□□□ 0.41
CLN3-255ENST00000637100 SV2BQ7L1I2 683 aa17.63■□□□□ 0.41
CLN3-255ENST00000637100 STKLD1Q8NE28 680 aa17.63■□□□□ 0.41
CLN3-255ENST00000637100 CD101Q93033 1021 aa17.63■□□□□ 0.41
CLN3-255ENST00000637100 ATP2A3Q93084 1043 aa17.63■□□□□ 0.41
CLN3-255ENST00000637100 POLR3BQ9NW08 1133 aaPredicted RBP17.63■□□□□ 0.41
CLN3-255ENST00000637100 DUS2Q9NX74 493 aaKnown RBP17.63■□□□□ 0.41
CLN3-255ENST00000637100 RBAKQ9NYW8 714 aaPredicted RBP17.63■□□□□ 0.41
CLN3-255ENST00000637100 CCDC39Q9UFE4 941 aa17.63■□□□□ 0.41
CLN3-255ENST00000637100 ARHGAP26Q9UNA1 814 aa17.63■□□□□ 0.41
CLN3-255ENST00000637100 MAGED2Q9UNF1 606 aaPredicted RBP17.63■□□□□ 0.41
CLN3-255ENST00000637100 CLIC4Q9Y696 253 aa17.63■□□□□ 0.41
CLN3-255ENST00000637100 ANAPC1Q9H1A4 1944 aa17.62■□□□□ 0.41
CLN3-255ENST00000637100 CEP295Q9C0D2 2601 aa17.62■□□□□ 0.41
CLN3-255ENST00000637100 BCLAF3A2AJT9 711 aaKnown RBP17.62■□□□□ 0.41
CLN3-255ENST00000637100 KIAA0391O15091 583 aaKnown RBP17.62■□□□□ 0.41
CLN3-255ENST00000637100 CCDC192P0DO97 292 aa17.62■□□□□ 0.41
CLN3-255ENST00000637100 ZXDBP98169 803 aa17.62■□□□□ 0.41
CLN3-255ENST00000637100 CCDC142Q17RM4 750 aa17.62■□□□□ 0.41
CLN3-255ENST00000637100 VSTM1Q6UX27 236 aa17.62■□□□□ 0.41
CLN3-255ENST00000637100 RASSF3Q86WH2 238 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms