RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 SCN4BQ8IWT1 228 aa17.34■□□□□ 0.37
CLN3-246ENST00000636228 ADGRF2Q8IZF7 708 aa17.34■□□□□ 0.37
CLN3-246ENST00000636228 TMEM86AQ8N2M4 240 aa17.34■□□□□ 0.37
CLN3-246ENST00000636228 SYNPOQ8N3V7 929 aa17.34■□□□□ 0.37
CLN3-246ENST00000636228 FAM160A2Q8N612 972 aaPredicted RBP17.34■□□□□ 0.37
CLN3-246ENST00000636228 LRRC52Q8N7C0 313 aa17.34■□□□□ 0.37
CLN3-246ENST00000636228 OR5B17Q8NGF7 314 aa17.34■□□□□ 0.37
CLN3-246ENST00000636228 CEP250Q9BV73 2442 aa17.34■□□□□ 0.37
CLN3-246ENST00000636228 GDAP2Q9NXN4 497 aa17.34■□□□□ 0.37
CLN3-246ENST00000636228 AXIN1O15169 862 aa17.33■□□□□ 0.36
CLN3-246ENST00000636228 NOL4O94818 638 aa17.33■□□□□ 0.36
CLN3-246ENST00000636228 LMO2P25791 158 aa17.33■□□□□ 0.36
CLN3-246ENST00000636228 DDX6P26196 483 aaKnown RBP eCLIP17.33■□□□□ 0.36
CLN3-246ENST00000636228 CNR2P34972 360 aa17.33■□□□□ 0.36
CLN3-246ENST00000636228 GALK1P51570 392 aa17.33■□□□□ 0.36
CLN3-246ENST00000636228 PSMC1P62191 440 aaKnown RBP17.33■□□□□ 0.36
CLN3-246ENST00000636228 RPL10AP62906 217 aaKnown RBP17.33■□□□□ 0.36
CLN3-246ENST00000636228 GRSF1Q12849 480 aaKnown RBP eCLIP17.33■□□□□ 0.36
CLN3-246ENST00000636228 CCDC6Q16204 474 aa17.33■□□□□ 0.36
CLN3-246ENST00000636228 CC2D1AQ6P1N0 951 aaPredicted RBP17.33■□□□□ 0.36
CLN3-246ENST00000636228 WDR5BQ86VZ2 330 aa17.33■□□□□ 0.36
CLN3-246ENST00000636228 CBWD2Q8IUF1 395 aa17.33■□□□□ 0.36
CLN3-246ENST00000636228 SPATA2LQ8IUW3 424 aaPredicted RBP17.33■□□□□ 0.36
CLN3-246ENST00000636228 GPD1LQ8N335 351 aa17.33■□□□□ 0.36
CLN3-246ENST00000636228 LEO1Q8WVC0 666 aaPredicted RBP17.33■□□□□ 0.36
CLN3-246ENST00000636228 RTKNQ9BST9 563 aa17.33■□□□□ 0.36
CLN3-246ENST00000636228 TMEM206Q9H813 350 aa17.33■□□□□ 0.36
CLN3-246ENST00000636228 TFIP11Q9UBB9 837 aaKnown RBP17.33■□□□□ 0.36
CLN3-246ENST00000636228 TRDMT1O14717 391 aaKnown RBP17.32■□□□□ 0.36
CLN3-246ENST00000636228 GABRDO14764 452 aa17.32■□□□□ 0.36
CLN3-246ENST00000636228 RNF40O75150 1001 aa17.32■□□□□ 0.36
CLN3-246ENST00000636228 PDGFRBP09619 1106 aa17.32■□□□□ 0.36
CLN3-246ENST00000636228 PRR23CQ6ZRP0 262 aa17.32■□□□□ 0.36
CLN3-246ENST00000636228 CCDC65Q8IXS2 484 aa17.32■□□□□ 0.36
CLN3-246ENST00000636228 TOP6BLQ8N6T0 577 aa17.32■□□□□ 0.36
CLN3-246ENST00000636228 KBTBD7Q8WVZ9 684 aa17.32■□□□□ 0.36
CLN3-246ENST00000636228 ANKRD36BP1Q96IX9 119 aa17.32■□□□□ 0.36
CLN3-246ENST00000636228 CNTNAP3BQ96NU0 1288 aa17.32■□□□□ 0.36
CLN3-246ENST00000636228 CNTNAP3Q9BZ76 1288 aa17.32■□□□□ 0.36
CLN3-246ENST00000636228 ABCB6Q9NP58 842 aa17.32■□□□□ 0.36
CLN3-246ENST00000636228 INTS13Q9NVM9 706 aa17.32■□□□□ 0.36
CLN3-246ENST00000636228 ZMYM5Q9UJ78 669 aa17.32■□□□□ 0.36
CLN3-246ENST00000636228 WNT6Q9Y6F9 365 aa17.32■□□□□ 0.36
CLN3-246ENST00000636228 ANK1P16157 1881 aa17.32■□□□□ 0.36
CLN3-246ENST00000636228 C2orf78A6NCI8 922 aa17.31■□□□□ 0.36
CLN3-246ENST00000636228 HOXA6P31267 233 aa17.31■□□□□ 0.36
CLN3-246ENST00000636228 GJA4P35212 333 aa17.31■□□□□ 0.36
CLN3-246ENST00000636228 HOXD13P35453 343 aa17.31■□□□□ 0.36
CLN3-246ENST00000636228 LHX1P48742 406 aa17.31■□□□□ 0.36
CLN3-246ENST00000636228 ALCAMQ13740 583 aa17.31■□□□□ 0.36
CLN3-246ENST00000636228 MTF1Q14872 753 aa17.31■□□□□ 0.36
CLN3-246ENST00000636228 STK38Q15208 465 aa17.31■□□□□ 0.36
CLN3-246ENST00000636228 CSRP2Q16527 193 aa17.31■□□□□ 0.36
CLN3-246ENST00000636228 ARL14EPQ8N8R7 260 aaPredicted RBP17.31■□□□□ 0.36
CLN3-246ENST00000636228 RDH13Q8NBN7 331 aa17.31■□□□□ 0.36
CLN3-246ENST00000636228 HPDLQ96IR7 371 aa17.31■□□□□ 0.36
CLN3-246ENST00000636228 SYT15Q9BQS2 421 aa17.31■□□□□ 0.36
CLN3-246ENST00000636228 LINC00597Q9H2U6 94 aa17.31■□□□□ 0.36
CLN3-246ENST00000636228 ECT2Q9H8V3 914 aa17.31■□□□□ 0.36
CLN3-246ENST00000636228 KIF9Q9HAQ2 790 aa17.31■□□□□ 0.36
CLN3-246ENST00000636228 DUS2Q9NX74 493 aaKnown RBP17.31■□□□□ 0.36
CLN3-246ENST00000636228 SLC8A2Q9UPR5 921 aa17.31■□□□□ 0.36
CLN3-246ENST00000636228 ZNF233A6NK53 670 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 TNNC2P02585 160 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 CKMP06732 381 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 USP17L7P0C7H9 530 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 BDNFP23560 247 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 PCSK1P29120 753 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 NASPP49321 788 aaPredicted RBP17.3■□□□□ 0.36
CLN3-246ENST00000636228 FAM160A1Q05DH4 1040 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 MYO1EQ12965 1108 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 ZNF268Q14587 947 aaPredicted RBP17.3■□□□□ 0.36
CLN3-246ENST00000636228 PDGFRLQ15198 375 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 CFAP221Q4G0U5 840 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 FAM171BQ6P995 826 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 KBTBD6Q86V97 674 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 LINC00301Q8NCQ3 95 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 EZH1Q92800 747 aaPredicted RBP17.3■□□□□ 0.36
CLN3-246ENST00000636228 MYLPFQ96A32 169 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 TRMT2BQ96GJ1 504 aaKnown RBP17.3■□□□□ 0.36
CLN3-246ENST00000636228 MYRFLQ96LU7 910 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 P2RY13Q9BPV8 354 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 ARRDC1-AS1Q9H2J1 176 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 CRTAC1Q9NQ79 661 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 HSPBP1Q9NZL4 362 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 UXTQ9UBK9 157 aaPredicted RBP17.3■□□□□ 0.36
CLN3-246ENST00000636228 R3HCC1Q9Y3T6 440 aaKnown RBP17.3■□□□□ 0.36
CLN3-246ENST00000636228 NCOR2Q9Y618 2525 aa17.3■□□□□ 0.36
CLN3-246ENST00000636228 TRAV19A0A0A6YYK7 116 aa17.29■□□□□ 0.36
CLN3-246ENST00000636228 STX6O43752 255 aa17.29■□□□□ 0.36
CLN3-246ENST00000636228 LRP3O75074 770 aa17.29■□□□□ 0.36
CLN3-246ENST00000636228 CST3P01034 146 aaPredicted RBP17.29■□□□□ 0.36
CLN3-246ENST00000636228 USP46P62068 366 aa17.29■□□□□ 0.36
CLN3-246ENST00000636228 SF3A2Q15428 464 aaKnown RBP17.29■□□□□ 0.36
CLN3-246ENST00000636228 ZNF77Q15935 545 aa17.29■□□□□ 0.36
CLN3-246ENST00000636228 E2F4Q16254 413 aa17.29■□□□□ 0.36
CLN3-246ENST00000636228 DUOXA2Q1HG44 320 aa17.29■□□□□ 0.36
CLN3-246ENST00000636228 FOXD4L5Q5VV16 416 aaPredicted RBP17.29■□□□□ 0.36
CLN3-246ENST00000636228 LIMS2Q7Z4I7 341 aa17.29■□□□□ 0.36
CLN3-246ENST00000636228 NETO1Q8TDF5 533 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms