RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 INSL6Q9Y581 213 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 TIMM13Q9Y5L4 95 aaPredicted RBP14.99□□□□□ -0.01
CLN3-242ENST00000635958 SLC4A7Q9Y6M7 1214 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 RCCD1A6NED2 376 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 POLR3GO15318 223 aaPredicted RBP14.99□□□□□ -0.01
CLN3-242ENST00000635958 IVLP07476 585 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 FGFR3P22607 806 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 PCSK1P29120 753 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 NOMO3P69849 1222 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 SLC20A2Q08357 652 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 MRPL58Q14197 206 aaKnown RBP14.99□□□□□ -0.01
CLN3-242ENST00000635958 ACAD10Q6JQN1 1059 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 PPP1R2P3Q6NXS1 205 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 KCNT2Q6UVM3 1135 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 SLC35F6Q8N357 371 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 C12orf29Q8N999 325 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 CYFIP2Q96F07 1278 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 YME1L1Q96TA2 773 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 GPR62Q9BZJ7 368 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 DPEP3Q9H4B8 488 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 ANKZF1Q9H8Y5 726 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 ST7Q9NRC1 585 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 SEPT11Q9NVA2 429 aaKnown RBP14.99□□□□□ -0.01
CLN3-242ENST00000635958 TAS2R14Q9NYV8 317 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 CDH9Q9ULB4 789 aa14.99□□□□□ -0.01
CLN3-242ENST00000635958 TULP2O00295 520 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 HCRTO43612 131 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 FTLP02792 175 aaPredicted RBP14.98□□□□□ -0.01
CLN3-242ENST00000635958 H2AFZP0C0S5 128 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 PTPN1P18031 435 aaKnown RBP14.98□□□□□ -0.01
CLN3-242ENST00000635958 LAG3P18627 525 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 ARHGAP25P42331 645 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 CENPCQ03188 943 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 HSP90B2PQ58FF3 399 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 KIAA0319Q5VV43 1072 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 OVOS1Q6IE37 1185 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 FUT10Q6P4F1 479 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 H2AFVQ71UI9 128 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 HERC6Q8IVU3 1022 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 WDTC1Q8N5D0 677 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 B3GALNT2Q8NCR0 500 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 FAM71BQ8TC56 605 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 SP7Q8TDD2 431 aaPredicted RBP14.98□□□□□ -0.01
CLN3-242ENST00000635958 IGSF21Q96ID5 467 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 RAD9AQ99638 391 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 LACRTQ9GZZ8 138 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 MRPL42Q9Y6G3 142 aaKnown RBP14.98□□□□□ -0.01
CLN3-242ENST00000635958 SF3B1O75533 1304 aaKnown RBP eCLIP14.98□□□□□ -0.013e-9■■■■■ 164.7
CLN3-242ENST00000635958 CEP290O15078 2479 aa14.98□□□□□ -0.01
CLN3-242ENST00000635958 A0A0U1RQJ8 604 aa14.97□□□□□ -0.01
CLN3-242ENST00000635958 TARSL2A2RTX5 802 aaKnown RBP14.97□□□□□ -0.01
CLN3-242ENST00000635958 ANKRD62A6NC57 917 aa14.97□□□□□ -0.01
CLN3-242ENST00000635958 BTNL10A8MVZ5 291 aa14.97□□□□□ -0.01
CLN3-242ENST00000635958 NT5C1B-RDH14C9J2C7 533 aa14.97□□□□□ -0.01
CLN3-242ENST00000635958 GALCP54803 685 aa14.97□□□□□ -0.01
CLN3-242ENST00000635958 YWHAHQ04917 246 aaPredicted RBP14.97□□□□□ -0.01
CLN3-242ENST00000635958 PKDCCQ504Y2 493 aa14.97□□□□□ -0.01
CLN3-242ENST00000635958 PPP1R26Q5T8A7 1209 aaPredicted RBP14.97□□□□□ -0.01
CLN3-242ENST00000635958 FAM171BQ6P995 826 aa14.97□□□□□ -0.01
CLN3-242ENST00000635958 KIAA1328Q86T90 577 aa14.97□□□□□ -0.01
CLN3-242ENST00000635958 TMEM173Q86WV6 379 aaPredicted RBP14.97□□□□□ -0.01
CLN3-242ENST00000635958 RNF168Q8IYW5 571 aaPredicted RBP14.97□□□□□ -0.01
CLN3-242ENST00000635958 THEM5Q8N1Q8 247 aa14.97□□□□□ -0.01
CLN3-242ENST00000635958 TMEM35BQ8NCS4 154 aa14.97□□□□□ -0.01
CLN3-242ENST00000635958 BCL7CQ8WUZ0 217 aaPredicted RBP14.97□□□□□ -0.01
CLN3-242ENST00000635958 ATRIPQ8WXE1 791 aa14.97□□□□□ -0.01
CLN3-242ENST00000635958 ZNF558Q96NG5 402 aa14.97□□□□□ -0.01
CLN3-242ENST00000635958 HNRNPABQ99729 332 aaKnown RBP14.97□□□□□ -0.01
CLN3-242ENST00000635958 MICAL2O94851 1124 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 LINC00271P0C7V0 271 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 ATP2A2P16615 1042 aaKnown RBP14.96□□□□□ -0.01
CLN3-242ENST00000635958 TKTP29401 623 aaKnown RBP14.96□□□□□ -0.01
CLN3-242ENST00000635958 PBX3P40426 434 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 TSC2P49815 1807 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 HNRNPH2P55795 449 aaKnown RBP14.96□□□□□ -0.01
CLN3-242ENST00000635958 KIF5AQ12840 1032 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 DENND1BQ6P3S1 775 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 PHF13Q86YI8 300 aaPredicted RBP14.96□□□□□ -0.01
CLN3-242ENST00000635958 SLC39A11Q8N1S5 342 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 CLP1Q92989 425 aaKnown RBP14.96□□□□□ -0.01
CLN3-242ENST00000635958 VCPIP1Q96JH7 1222 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 PKMYT1Q99640 499 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 SYT15Q9BQS2 421 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 PACSIN1Q9BY11 444 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 TSGA10Q9BZW7 698 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 ADAM21Q9UKJ8 722 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 TSPAN16Q9UKR8 245 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 ERICH4A6NGS2 130 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 KRT86O43790 486 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 ATP2C2O75185 946 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 TMEM253P0C7T8 217 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 ACAT1P24752 427 aaKnown RBP14.96□□□□□ -0.01
CLN3-242ENST00000635958 GPD2P43304 727 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 TCEAL1Q15170 157 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 FAM171A1Q5VUB5 890 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 NAA35Q5VZE5 725 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 FIBCD1Q8N539 461 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 ANKRD52Q8NB46 1076 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 COLGALT1Q8NBJ5 622 aa14.96□□□□□ -0.01
CLN3-242ENST00000635958 MYCBPAPQ8TBZ2 947 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms