RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 LIASO43766 372 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 STRNO43815 780 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 DGKDQ16760 1214 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 QPCTQ16769 361 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 FAM102AQ5T9C2 384 aaPredicted RBP11.19□□□□□ -0.62
CUX1-221ENST00000622516 HOOK3Q86VS8 718 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 SESTD1Q86VW0 696 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 XYLT1Q86Y38 959 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 MYCBPAPQ8TBZ2 947 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 ZNF473Q8WTR7 871 aaKnown RBP11.19□□□□□ -0.62
CUX1-221ENST00000622516 LRRN4Q8WUT4 740 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 SLCO2A1Q92959 643 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 MRRFQ96E11 262 aaKnown RBP11.19□□□□□ -0.62
CUX1-221ENST00000622516 RUNDC3BQ96NL0 473 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 NFKBIZQ9BYH8 718 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 FLRT1Q9NZU1 646 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 TUBGCP4Q9UGJ1 667 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 NEU2Q9Y3R4 380 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 TRIP12Q14669 1992 aaPredicted RBP11.19□□□□□ -0.62
CUX1-221ENST00000622516 CITO14578 2027 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 BANF1O75531 89 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 PIAS1O75925 651 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 CHN1P15882 459 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 HOXA11P31270 313 aaPredicted RBP11.19□□□□□ -0.62
CUX1-221ENST00000622516 CDH5P33151 784 aaPredicted RBP11.19□□□□□ -0.62
CUX1-221ENST00000622516 IFNAR2P48551 515 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 ARSEP51690 589 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 BEX3Q00994 111 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 TNFAIP2Q03169 654 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 GPS1Q13098 491 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 AUHQ13825 339 aaKnown RBP11.19□□□□□ -0.62
CUX1-221ENST00000622516 PIGHQ14442 188 aaPredicted RBP11.19□□□□□ -0.62
CUX1-221ENST00000622516 CCL14Q16627 93 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 FAM187BQ17R55 369 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 C15orf59Q2T9L4 293 aaPredicted RBP11.19□□□□□ -0.62
CUX1-221ENST00000622516 CATSPER4Q7RTX7 472 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 ACOT1Q86TX2 421 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 ARFGAP2Q8N6H7 521 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 MGARPQ8TDB4 240 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 GRK7Q8WTQ7 553 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 MAIP1Q8WWC4 291 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 TLCD1Q96CP7 247 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 ADPGKQ9BRR6 497 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 TRAIPQ9BWF2 469 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 ZNF518BQ9C0D4 1074 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 SIGLEC16A6NMB1 481 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 SGK1O00141 431 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 TJP3O95049 919 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 MAP3K6O95382 1288 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 CDKN2BP42772 138 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 GPD2P43304 727 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 GRB14Q14449 540 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 TFDP3Q5H9I0 405 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 EMC10Q5UCC4 262 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 PLEKHH3Q7Z736 793 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 RBM41Q96IZ5 413 aaKnown RBP11.19□□□□□ -0.62
CUX1-221ENST00000622516 MRPL45Q9BRJ2 306 aaKnown RBP11.19□□□□□ -0.62
CUX1-221ENST00000622516 ABHD16BQ9H3Z7 469 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 NXF3Q9H4D5 531 aaKnown RBP11.19□□□□□ -0.62
CUX1-221ENST00000622516 RRAGCQ9HB90 399 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 FEZ2Q9UHY8 353 aaPredicted RBP11.19□□□□□ -0.62
CUX1-221ENST00000622516 GJD2Q9UKL4 321 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 TSPAN16Q9UKR8 245 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 FAM169AQ9Y6X4 670 aa11.19□□□□□ -0.62
CUX1-221ENST00000622516 hCG_1818297A0A087WSY0 165 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 E5RJQ4 531 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 MED7O43513 233 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 CST8O60676 142 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 KLRC2P26717 231 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 GBP1P32455 592 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 MAN1A1P33908 653 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 CETN2P41208 172 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 GDF10P55107 478 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 ATP11AP98196 1134 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 GAD2Q05329 585 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 MMRN1Q13201 1228 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 FASTKD3Q14CZ7 662 aaKnown RBP11.18□□□□□ -0.62
CUX1-221ENST00000622516 LRRC14Q15048 493 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 C7orf31Q8N865 590 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 TMEM40Q8WWA1 233 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 DNAJB3Q8WWF6 145 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 CALN1Q9BXU9 219 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 ADAM7Q9H2U9 754 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 ASB7Q9H672 318 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.18□□□□□ -0.62
CUX1-221ENST00000622516 NME7Q9Y5B8 376 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.18□□□□□ -0.62
CUX1-221ENST00000622516 RBM47A0AV96 593 aaKnown RBP11.18□□□□□ -0.62
CUX1-221ENST00000622516 PDGFRBP09619 1106 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 MIPP30301 263 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 GCLCP48506 637 aaPredicted RBP11.18□□□□□ -0.62
CUX1-221ENST00000622516 SLC25A11Q02978 314 aaKnown RBP11.18□□□□□ -0.62
CUX1-221ENST00000622516 PPP1R26Q5T8A7 1209 aaPredicted RBP11.18□□□□□ -0.62
CUX1-221ENST00000622516 SPRYD7Q5W111 196 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 OR6B2Q6IFH4 312 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 TRNP1Q6NT89 227 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 SCUBE3Q8IX30 993 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 CCDC89Q8N998 374 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 ACTL9Q8TC94 416 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 B3GNT5Q9BYG0 378 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms