RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 INO80B-WBP1J3KQ70 363 aa6.39□□□□□ -1.39
VPS29-212ENST00000621131 VPS4BO75351 444 aa6.39□□□□□ -1.39
VPS29-212ENST00000621131 SOAT2O75908 522 aa6.39□□□□□ -1.39
VPS29-212ENST00000621131 RHOP08100 348 aa6.39□□□□□ -1.39
VPS29-212ENST00000621131 TYRP14679 529 aa6.39□□□□□ -1.39
VPS29-212ENST00000621131 GPD1P21695 349 aa6.39□□□□□ -1.39
VPS29-212ENST00000621131 BOP1Q14137 746 aaKnown RBP6.39□□□□□ -1.39
VPS29-212ENST00000621131 PPP1R3BQ86XI6 285 aa6.39□□□□□ -1.39
VPS29-212ENST00000621131 TNPO1Q92973 898 aaKnown RBP6.39□□□□□ -1.39
VPS29-212ENST00000621131 PBKQ96KB5 322 aa6.39□□□□□ -1.39
VPS29-212ENST00000621131 HAPLN3Q96S86 360 aa6.39□□□□□ -1.39
VPS29-212ENST00000621131 TPSD1Q9BZJ3 242 aa6.39□□□□□ -1.39
VPS29-212ENST00000621131 INO80BQ9C086 356 aaPredicted RBP6.39□□□□□ -1.39
VPS29-212ENST00000621131 TINAGL1Q9GZM7 467 aaPredicted RBP6.39□□□□□ -1.39
VPS29-212ENST00000621131 AOX1Q06278 1338 aa6.39□□□□□ -1.39
VPS29-212ENST00000621131 ANKRD50Q9ULJ7 1429 aa6.39□□□□□ -1.39
VPS29-212ENST00000621131 FANCAO15360 1455 aa6.39□□□□□ -1.39
VPS29-212ENST00000621131 DTNBO60941 627 aa6.38□□□□□ -1.39
VPS29-212ENST00000621131 FTLP02792 175 aaPredicted RBP6.38□□□□□ -1.39
VPS29-212ENST00000621131 CATIPQ7Z7H3 387 aa6.38□□□□□ -1.39
VPS29-212ENST00000621131 ZCRB1Q8TBF4 217 aaKnown RBP6.38□□□□□ -1.39
VPS29-212ENST00000621131 HSPBAP1Q96EW2 488 aa6.38□□□□□ -1.39
VPS29-212ENST00000621131 ALG8Q9BVK2 526 aa6.38□□□□□ -1.39
VPS29-212ENST00000621131 GTPBP4Q9BZE4 634 aaKnown RBP6.38□□□□□ -1.39
VPS29-212ENST00000621131 BRINP2Q9C0B6 783 aa6.38□□□□□ -1.39
VPS29-212ENST00000621131 SIK2Q9H0K1 926 aa6.38□□□□□ -1.39
VPS29-212ENST00000621131 TCF7L1Q9HCS4 588 aa6.38□□□□□ -1.39
VPS29-212ENST00000621131 LMBRD1Q9NUN5 540 aa6.38□□□□□ -1.39
VPS29-212ENST00000621131 PNPOQ9NVS9 261 aa6.38□□□□□ -1.39
VPS29-212ENST00000621131 DKK3Q9UBP4 350 aa6.38□□□□□ -1.39
VPS29-212ENST00000621131 NR2E3Q9Y5X4 410 aa6.38□□□□□ -1.39
VPS29-212ENST00000621131 RAD54BQ9Y620 910 aa6.38□□□□□ -1.39
VPS29-212ENST00000621131 KIF15Q9NS87 1388 aa6.38□□□□□ -1.39
VPS29-212ENST00000621131 MBD5Q9P267 1494 aa6.38□□□□□ -1.39
VPS29-212ENST00000621131 DUOX2Q9NRD8 1548 aa6.38□□□□□ -1.39
VPS29-212ENST00000621131 KDM5DQ9BY66 1539 aa6.37□□□□□ -1.39
VPS29-212ENST00000621131 IL33O95760 270 aa6.37□□□□□ -1.39
VPS29-212ENST00000621131 AHSGP02765 367 aa6.37□□□□□ -1.39
VPS29-212ENST00000621131 NR2F6P10588 404 aa6.37□□□□□ -1.39
VPS29-212ENST00000621131 AKAP5P24588 427 aa6.37□□□□□ -1.39
VPS29-212ENST00000621131 NKX6-1P78426 367 aaPredicted RBP6.37□□□□□ -1.39
VPS29-212ENST00000621131 PGS1Q32NB8 556 aa6.37□□□□□ -1.39
VPS29-212ENST00000621131 RBM20Q5T481 1227 aaKnown RBP6.37□□□□□ -1.39
VPS29-212ENST00000621131 LRCH2Q5VUJ6 765 aa6.37□□□□□ -1.39
VPS29-212ENST00000621131 RASAL3Q86YV0 1011 aa6.37□□□□□ -1.39
VPS29-212ENST00000621131 DDX17Q92841 729 aaKnown RBP6.37□□□□□ -1.39
VPS29-212ENST00000621131 CHMP4CQ96CF2 233 aa6.37□□□□□ -1.39
VPS29-212ENST00000621131 FAM167AQ96KS9 214 aa6.37□□□□□ -1.39
VPS29-212ENST00000621131 ACTRT3Q9BYD9 372 aa6.37□□□□□ -1.39
VPS29-212ENST00000621131 SERTAD4Q9NUC0 356 aa6.37□□□□□ -1.39
VPS29-212ENST00000621131 FEZ2Q9UHY8 353 aaPredicted RBP6.37□□□□□ -1.39
VPS29-212ENST00000621131 LUC7L2Q9Y383 392 aaKnown RBP6.37□□□□□ -1.39
VPS29-212ENST00000621131 PCDHA1Q9Y5I3 950 aa6.37□□□□□ -1.39
VPS29-212ENST00000621131 RTEL1-TNFRSF6BF6WH68 1400 aa6.36□□□□□ -1.39
VPS29-212ENST00000621131 ERBINQ96RT1 1412 aa6.36□□□□□ -1.39
VPS29-212ENST00000621131 GCOM1H8Y6P7 765 aaPredicted RBP6.36□□□□□ -1.39
VPS29-212ENST00000621131 URI1O94763 535 aaPredicted RBP6.36□□□□□ -1.39
VPS29-212ENST00000621131 CDK4P11802 303 aa6.36□□□□□ -1.39
VPS29-212ENST00000621131 CHRM3P20309 590 aa6.36□□□□□ -1.39
VPS29-212ENST00000621131 ITGALP20701 1170 aa6.36□□□□□ -1.39
VPS29-212ENST00000621131 GCLCP48506 637 aaPredicted RBP6.36□□□□□ -1.39
VPS29-212ENST00000621131 PTPROQ16827 1216 aa6.36□□□□□ -1.39
VPS29-212ENST00000621131 VPS53Q5VIR6 699 aa6.36□□□□□ -1.39
VPS29-212ENST00000621131 DPF1Q92782 380 aa6.36□□□□□ -1.39
VPS29-212ENST00000621131 FKBP10Q96AY3 582 aa6.36□□□□□ -1.39
VPS29-212ENST00000621131 FAM136AQ96C01 138 aa6.36□□□□□ -1.39
VPS29-212ENST00000621131 KMT5AQ9NQR1 393 aa6.36□□□□□ -1.39
VPS29-212ENST00000621131 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.36□□□□□ -1.39
VPS29-212ENST00000621131 EHD3Q9NZN3 535 aa6.36□□□□□ -1.39
VPS29-212ENST00000621131 FER1L4A9Z1Z3 1794 aa6.36□□□□□ -1.39
VPS29-212ENST00000621131 UNC13BO14795 1591 aa6.35□□□□□ -1.39
VPS29-212ENST00000621131 ZNF518AQ6AHZ1 1483 aa6.35□□□□□ -1.39
VPS29-212ENST00000621131 SPAG9O60271 1321 aaKnown RBP6.35□□□□□ -1.39
VPS29-212ENST00000621131 TTLL1O95922 423 aa6.35□□□□□ -1.39
VPS29-212ENST00000621131 CD6P30203 668 aa6.35□□□□□ -1.39
VPS29-212ENST00000621131 PTF1AQ7RTS3 328 aa6.35□□□□□ -1.39
VPS29-212ENST00000621131 AMIGO2Q86SJ2 522 aa6.35□□□□□ -1.39
VPS29-212ENST00000621131 ZBTB46Q86UZ6 589 aa6.35□□□□□ -1.39
VPS29-212ENST00000621131 MVB12AQ96EY5 273 aa6.35□□□□□ -1.39
VPS29-212ENST00000621131 GPATCH3Q96I76 525 aa6.35□□□□□ -1.39
VPS29-212ENST00000621131 NELL2Q99435 816 aa6.35□□□□□ -1.39
VPS29-212ENST00000621131 SERHLQ9NQF3 203 aa6.35□□□□□ -1.39
VPS29-212ENST00000621131 WNT6Q9Y6F9 365 aa6.35□□□□□ -1.39
VPS29-212ENST00000621131 EIF2AK4Q9P2K8 1649 aaKnown RBP6.35□□□□□ -1.39
VPS29-212ENST00000621131 INO80Q9ULG1 1556 aaPredicted RBP6.35□□□□□ -1.39
VPS29-212ENST00000621131 ATP7AQ04656 1500 aa6.35□□□□□ -1.39
VPS29-212ENST00000621131 ZFYVE16Q7Z3T8 1539 aa6.35□□□□□ -1.39
VPS29-212ENST00000621131 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.34□□□□□ -1.39
VPS29-212ENST00000621131 GNAI2P04899 355 aa6.34□□□□□ -1.39
VPS29-212ENST00000621131 ZFXP17010 805 aaPredicted RBP6.34□□□□□ -1.39
VPS29-212ENST00000621131 HDCP19113 662 aa6.34□□□□□ -1.39
VPS29-212ENST00000621131 PCSK6P29122 969 aa6.34□□□□□ -1.39
VPS29-212ENST00000621131 SRSF4Q08170 494 aaKnown RBP6.34□□□□□ -1.39
VPS29-212ENST00000621131 BMPR2Q13873 1038 aa6.34□□□□□ -1.39
VPS29-212ENST00000621131 PLS1Q14651 629 aa6.34□□□□□ -1.39
VPS29-212ENST00000621131 TBCCQ15814 346 aa6.34□□□□□ -1.39
VPS29-212ENST00000621131 FAM153CQ494X1 144 aa6.34□□□□□ -1.39
VPS29-212ENST00000621131 EMC10Q5UCC4 262 aa6.34□□□□□ -1.39
VPS29-212ENST00000621131 FAM160B1Q5W0V3 765 aa6.34□□□□□ -1.39
VPS29-212ENST00000621131 FCRLBQ6BAA4 426 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms