RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 MTDHQ86UE4 582 aaKnown RBP10.7□□□□□ -0.7
VPS39-214ENST00000614932 RASGEF1CQ8N431 466 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 DCLK2Q8N568 766 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 METTL13Q8N6R0 699 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 FBXO25Q8TCJ0 367 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 TCF12Q99081 682 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 P2RX7Q99572 595 aaKnown RBP10.7□□□□□ -0.7
VPS39-214ENST00000614932 KANSL2Q9H9L4 492 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 PI4KBQ9UBF8 816 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 RSL24D1Q9UHA3 163 aaKnown RBP10.7□□□□□ -0.7
VPS39-214ENST00000614932 MOSPD1Q9UJG1 213 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 E9PMD0 336 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 C2CD2LO14523 706 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 TXNDC9O14530 226 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 USP1O94782 785 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 PGM1P36871 562 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 ETV3P41162 512 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 NOVP48745 357 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 ZNF132P52740 706 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 DRG2P55039 364 aaKnown RBP10.7□□□□□ -0.7
VPS39-214ENST00000614932 KYNUQ16719 465 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 LONRF1Q17RB8 773 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 ABCB5Q2M3G0 1257 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 MIIPQ5JXC2 388 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 ZDHHC24Q6UX98 284 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 RFX8Q6ZV50 586 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 SV2BQ7L1I2 683 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 TTC30BQ8N4P2 665 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 LZTR1Q8N653 840 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 KIAA0895Q8NCT3 520 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 GIMAP8Q8ND71 665 aaPredicted RBP10.7□□□□□ -0.7
VPS39-214ENST00000614932 CHPT1Q8WUD6 406 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 HAS1Q92839 578 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 RUNDC3BQ96NL0 473 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 MTMR9Q96QG7 549 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 PYM1Q9BRP8 204 aaKnown RBP10.7□□□□□ -0.7
VPS39-214ENST00000614932 SIAEQ9HAT2 523 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 RIC8AQ9NPQ8 531 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 MAN1C1Q9NR34 630 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.7□□□□□ -0.7
VPS39-214ENST00000614932 MTRF1LQ9UGC7 380 aaKnown RBP10.7□□□□□ -0.7
VPS39-214ENST00000614932 HEMK1Q9Y5R4 338 aaPredicted RBP10.7□□□□□ -0.7
VPS39-214ENST00000614932 MYH11P35749 1972 aa10.7□□□□□ -0.7
VPS39-214ENST00000614932 COL11A2P13942 1736 aaPredicted RBP10.69□□□□□ -0.7
VPS39-214ENST00000614932 SLX4Q8IY92 1834 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 A0A1W2PRG0 241 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 MEIS1O00470 390 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 LAD1O00515 517 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 CDK2AP1O14519 115 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 SPAG7O75391 227 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 RHOBTB3O94955 611 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 CCDC159P0C7I6 412 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 RARGP13631 454 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 DDX5P17844 614 aaKnown RBP10.69□□□□□ -0.7
VPS39-214ENST00000614932 FGFR4P22455 802 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 DR1Q01658 176 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 BTKQ06187 659 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 CD300CQ08708 224 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 ACAP1Q15027 740 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 TMEM266Q2M3C6 531 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 TRMT5Q32P41 509 aaKnown RBP10.69□□□□□ -0.7
VPS39-214ENST00000614932 FAM117BQ6P1L5 589 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 PDZD8Q8NEN9 1154 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 ACTRT2Q8TDY3 377 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 LARP4BQ92615 738 aaKnown RBP10.69□□□□□ -0.7
VPS39-214ENST00000614932 SGF29Q96ES7 293 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 CNOT6LQ96LI5 555 aaKnown RBP10.69□□□□□ -0.7
VPS39-214ENST00000614932 FAM161BQ96MY7 647 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 B3GNT4Q9C0J1 378 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 GPAMQ9HCL2 828 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 ZNF304Q9HCX3 659 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 FAM207AQ9NSI2 230 aaPredicted RBP10.69□□□□□ -0.7
VPS39-214ENST00000614932 ARL8BQ9NVJ2 186 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 PPP1R1BQ9UD71 204 aaPredicted RBP10.69□□□□□ -0.7
VPS39-214ENST00000614932 SCN9AQ15858 1988 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.69□□□□□ -0.7
VPS39-214ENST00000614932 FAM187AA6NFU0 413 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 EPHB6O15197 1021 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 STAMBPO95630 424 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 ATP6V1B1P15313 513 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 CETN2P41208 172 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 NR1H2P55055 460 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 DNAJC3Q13217 504 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 TMCO4Q5TGY1 634 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 KRT79Q5XKE5 535 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 TTI2Q6NXR4 508 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 DEFB132Q7Z7B7 95 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.69□□□□□ -0.7
VPS39-214ENST00000614932 LILRB4Q8NHJ6 448 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 FGFBP2Q9BYJ0 223 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 GLT8D2Q9H1C3 349 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 TAS2R1Q9NYW7 299 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 ZBTB21Q9ULJ3 1066 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 PPM1HQ9ULR3 514 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 PCDHA12Q9UN75 941 aa10.69□□□□□ -0.7
VPS39-214ENST00000614932 LTBP1Q14766 1721 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 POTEB3A0JP26 581 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 POTECB2RU33 542 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 ITM2AO43736 263 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 MAGEC1O60732 1142 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms