RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 PCED1BQ96HM7 432 aa13□□□□□ -0.33
LIG1-217ENST00000599165 MYRFLQ96LU7 910 aa13□□□□□ -0.33
LIG1-217ENST00000599165 SMG9Q9H0W8 520 aaKnown RBP13□□□□□ -0.33
LIG1-217ENST00000599165 HEBP1Q9NRV9 189 aa13□□□□□ -0.33
LIG1-217ENST00000599165 CDH9Q9ULB4 789 aa13□□□□□ -0.33
LIG1-217ENST00000599165 RIF1Q5UIP0 2472 aaKnown RBP12.99□□□□□ -0.33
LIG1-217ENST00000599165 KANSL1LA0AUZ9 987 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 SLC38A8A6NNN8 435 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 GADD45BO75293 160 aaPredicted RBP12.99□□□□□ -0.33
LIG1-217ENST00000599165 FAM163BP0C2L3 166 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 NR2F2P24468 414 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 TARSP26639 723 aaKnown RBP12.99□□□□□ -0.33
LIG1-217ENST00000599165 MAGEA11P43364 429 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 RAP1GAPP47736 663 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 PMS1P54277 932 aaKnown RBP12.99□□□□□ -0.33
LIG1-217ENST00000599165 CDH8P55286 799 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 USP46P62068 366 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 PRKCQQ04759 706 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 FAM160A1Q05DH4 1040 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 PPP3CAQ08209 521 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 NCOA4Q13772 614 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 VEPH1Q14D04 833 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 WDR44Q5JSH3 913 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 CEP135Q66GS9 1140 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 SV2AQ7L0J3 742 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 MFSD6LQ8IWD5 586 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 MYCBPAPQ8TBZ2 947 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 FAM200AQ8TCP9 573 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 DEPDC1BQ8WUY9 529 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 DNASE1L2Q92874 299 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 FUBP3Q96I24 572 aaKnown RBP eCLIP12.99□□□□□ -0.33
LIG1-217ENST00000599165 MMS19Q96T76 1030 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 TRMT61BQ9BVS5 477 aaKnown RBP12.99□□□□□ -0.33
LIG1-217ENST00000599165 GPR88Q9GZN0 384 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 TASP1Q9H6P5 420 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 LTB4R2Q9NPC1 389 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 TRPV5Q9NQA5 729 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 NXF1Q9UBU9 619 aaKnown RBP12.99□□□□□ -0.33
LIG1-217ENST00000599165 VPS13AQ96RL7 3174 aa12.99□□□□□ -0.33
LIG1-217ENST00000599165 ZFHX2Q9C0A1 2572 aaPredicted RBP12.98□□□□□ -0.33
LIG1-217ENST00000599165 MAPK13O15264 365 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 CALUO43852 315 aaPredicted RBP12.98□□□□□ -0.33
LIG1-217ENST00000599165 TRIM49P0CI25 452 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 TRIM49CP0CI26 452 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 CDC25CP30307 473 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 GDI1P31150 447 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 ATICP31939 592 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 PRCPP42785 496 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 AP3M2P53677 418 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 PFKPQ01813 784 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 MDH1BQ5I0G3 518 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 SPOPLQ6IQ16 392 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 TPRG1Q6ZUI0 275 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 PAQR9Q6ZVX9 377 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 ALYREFQ86V81 257 aaKnown RBP12.98□□□□□ -0.33
LIG1-217ENST00000599165 SPATA2LQ8IUW3 424 aaPredicted RBP12.98□□□□□ -0.33
LIG1-217ENST00000599165 ZC3H3Q8IXZ2 948 aaKnown RBP12.98□□□□□ -0.33
LIG1-217ENST00000599165 MAML2Q8IZL2 1156 aaPredicted RBP12.98□□□□□ -0.33
LIG1-217ENST00000599165 SYAP1Q96A49 352 aaPredicted RBP12.98□□□□□ -0.33
LIG1-217ENST00000599165 EEF2KMTQ96G04 330 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 TRMT2BQ96GJ1 504 aaKnown RBP12.98□□□□□ -0.33
LIG1-217ENST00000599165 SLC22A12Q96S37 553 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 SLITRK6Q9H5Y7 841 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 BRD9Q9H8M2 597 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 APOBEC3GQ9HC16 384 aaKnown RBP12.98□□□□□ -0.33
LIG1-217ENST00000599165 HMGXB4Q9UGU5 601 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 CCL26Q9Y258 94 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 SIT1Q9Y3P8 196 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 PCDHA5Q9Y5H7 936 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 MYH10P35580 1976 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 FAM186AA6NE01 2351 aa12.98□□□□□ -0.33
LIG1-217ENST00000599165 IKBKBO14920 756 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 FGF19O95750 216 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 ASS1P00966 412 aaKnown RBP12.97□□□□□ -0.33
LIG1-217ENST00000599165 CSH1P0DML2 217 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 CSH2P0DML3 217 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 PTPN1P18031 435 aaKnown RBP12.97□□□□□ -0.33
LIG1-217ENST00000599165 BMP6P22004 513 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 BDNFP23560 247 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 GNL1P36915 607 aaPredicted RBP12.97□□□□□ -0.33
LIG1-217ENST00000599165 ASPAP45381 313 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 MRE11P49959 708 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 VAMP7P51809 220 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 RPL10AP62906 217 aaKnown RBP12.97□□□□□ -0.33
LIG1-217ENST00000599165 TNNC1P63316 161 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 BIRC3Q13489 604 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 TRPC3Q13507 836 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 ANGPT1Q15389 498 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 ZNF699Q32M78 642 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 COBLL1Q53SF7 1204 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 TXNDC8Q6A555 127 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 OR6B3Q8NGW1 331 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 USP13Q92995 863 aaPredicted RBP12.97□□□□□ -0.33
LIG1-217ENST00000599165 CLDN23Q96B33 292 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 CHFRQ96EP1 664 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 ZFYVE19Q96K21 471 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 TIGD1Q96MW7 591 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 B3GNT5Q9BYG0 378 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 ZNF518BQ9C0D4 1074 aa12.97□□□□□ -0.33
LIG1-217ENST00000599165 OBP2AQ9NY56 170 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms