RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 TMEM196Q5HYL7 178 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 TXNDC11Q6PKC3 985 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 WDR5BQ86VZ2 330 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 SPATA2LQ8IUW3 424 aaPredicted RBP14.6□□□□□ -0.07
TRIM28-211ENST00000597968 ADGRF2Q8IZF7 708 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 CAMKK1Q8N5S9 505 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 MAB21L3Q8N8X9 362 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 USP13Q92995 863 aaPredicted RBP14.6□□□□□ -0.07
TRIM28-211ENST00000597968 SPATA17Q96L03 361 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 PI4K2AQ9BTU6 479 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 TRIM9Q9C026 710 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 PDE11AQ9HCR9 933 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 GKN1Q9NS71 199 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 SIX4Q9UIU6 781 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 CDH9Q9ULB4 789 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 A0A087X0B3 334 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 CHURC1-FNTBB4DL54 471 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 AKAP3O75969 853 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 PRPF6O94906 941 aaKnown RBP14.59□□□□□ -0.07
TRIM28-211ENST00000597968 KRT19P08727 400 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 USP17L7P0C7H9 530 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 SOX9P48436 509 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 WNT7BP56706 349 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 SIM2Q14190 667 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-211ENST00000597968 PON2Q15165 354 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 E2F4Q16254 413 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 SOWAHAQ2M3V2 549 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 ATL3Q6DD88 541 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 ZNF507Q8TCN5 953 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 LOXL4Q96JB6 756 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 ZFYVE19Q96K21 471 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 MTMR12Q9C0I1 747 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 IKZF4Q9H2S9 585 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 TMLHEQ9NVH6 421 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 GTF3C4Q9UKN8 822 aa14.59□□□□□ -0.07
TRIM28-211ENST00000597968 CDV3Q9UKY7 258 aaKnown RBP14.59□□□□□ -0.07
TRIM28-211ENST00000597968 TRAV19A0A0A6YYK7 116 aa14.58□□□□□ -0.08
TRIM28-211ENST00000597968 CUTAO60888 179 aa14.58□□□□□ -0.08
TRIM28-211ENST00000597968 TACC1O75410 805 aa14.58□□□□□ -0.08
TRIM28-211ENST00000597968 STAU1O95793 577 aaKnown RBP14.58□□□□□ -0.08
TRIM28-211ENST00000597968 WARSP23381 471 aaKnown RBP14.58□□□□□ -0.08
TRIM28-211ENST00000597968 TNK2Q07912 1038 aa14.58□□□□□ -0.08
TRIM28-211ENST00000597968 CSRP2Q16527 193 aa14.58□□□□□ -0.08
TRIM28-211ENST00000597968 EPM2AIP1Q7L775 607 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-211ENST00000597968 CPA6Q8N4T0 437 aa14.58□□□□□ -0.08
TRIM28-211ENST00000597968 NETO1Q8TDF5 533 aa14.58□□□□□ -0.08
TRIM28-211ENST00000597968 OSCP1Q8WVF1 389 aa14.58□□□□□ -0.08
TRIM28-211ENST00000597968 HPDLQ96IR7 371 aa14.58□□□□□ -0.08
TRIM28-211ENST00000597968 PANK2Q9BZ23 570 aa14.58□□□□□ -0.08
TRIM28-211ENST00000597968 PCIF1Q9H4Z3 704 aa14.58□□□□□ -0.08
TRIM28-211ENST00000597968 HPS4Q9NQG7 708 aa14.58□□□□□ -0.08
TRIM28-211ENST00000597968 RBM12Q9NTZ6 932 aaKnown RBP14.58□□□□□ -0.08
TRIM28-211ENST00000597968 HSPBP1Q9NZL4 362 aa14.58□□□□□ -0.08
TRIM28-211ENST00000597968 MAGEC2Q9UBF1 373 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-211ENST00000597968 USP18Q9UMW8 372 aa14.58□□□□□ -0.08
TRIM28-211ENST00000597968 MAGED2Q9UNF1 606 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-211ENST00000597968 KIF26AQ9ULI4 1882 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-211ENST00000597968 TCHHQ07283 1943 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 GOLGA8IPA6NC78 632 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 GOLGA8JA6NMD2 632 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 TRIM66O15016 1216 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 CYP2F1P24903 491 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 ATXN1P54253 815 aaKnown RBP14.57□□□□□ -0.08
TRIM28-211ENST00000597968 NR1H3Q13133 447 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 MTF1Q14872 753 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 SNRNP35Q16560 246 aaKnown RBP14.57□□□□□ -0.08
TRIM28-211ENST00000597968 DDR2Q16832 855 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 WDR44Q5JSH3 913 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 TXNDC8Q6A555 127 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 PRR23BQ6ZRT6 265 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 Q6ZS52 159 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 HS2ST1Q7LGA3 356 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 C12orf56Q8IXR9 622 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 PDILTQ8N807 584 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 ZSWIM2Q8NEG5 633 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 TMEM174Q8WUU8 243 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 DDX1Q92499 740 aaKnown RBP14.57□□□□□ -0.08
TRIM28-211ENST00000597968 ATP2A3Q93084 1043 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 SNX21Q969T3 373 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 FNBP1Q96RU3 617 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 C7orf25Q9BPX7 421 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 CCL26Q9Y258 94 aa14.57□□□□□ -0.08
TRIM28-211ENST00000597968 GPR179Q6PRD1 2367 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 PVALEFA0A1B0GWK0 134 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 HRO43593 1189 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 TADA3O75528 432 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 ATICP31939 592 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 FNTBP49356 437 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 AP3M2P53677 418 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 NOP14P78316 857 aaKnown RBP14.56□□□□□ -0.08
TRIM28-211ENST00000597968 ASIC1P78348 528 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 EHHADHQ08426 723 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 USP4Q13107 963 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 ZNF77Q15935 545 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 BMT2Q1RMZ1 405 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 FAM26FQ5R3K3 315 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 DENND5BQ6ZUT9 1274 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 UNC13DQ70J99 1090 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 TRAPPC11Q7Z392 1133 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms