RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 CHADO15335 359 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 HUS1O60921 280 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 NOL4O94818 638 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 PDGFRBP09619 1106 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 TMEM191BP0C7N4 346 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 DLATP10515 647 aaKnown RBP11.24□□□□□ -0.61
LIG1-213ENST00000596672 WARSP23381 471 aaKnown RBP11.24□□□□□ -0.61
LIG1-213ENST00000596672 CMA1P23946 247 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 CCNE1P24864 410 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 WEE1P30291 646 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 NDUFA8P51970 172 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 MYL6P60660 151 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 DUOXA2Q1HG44 320 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 TRIM68Q6AZZ1 485 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 PKN3Q6P5Z2 889 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 ZNF852Q6ZMS4 543 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 Q6ZS52 159 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 WDR49Q8IV35 697 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 C12orf56Q8IXR9 622 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 ADSSL1Q8N142 457 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 DEPDC1BQ8WUY9 529 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 NKD2Q969F2 451 aaPredicted RBP11.24□□□□□ -0.61
LIG1-213ENST00000596672 MYLPFQ96A32 169 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 FAM83CQ9BQN1 747 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 IRF2BPLQ9H1B7 796 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 GDPD2Q9HCC8 539 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 PRMT8Q9NR22 394 aaPredicted RBP11.24□□□□□ -0.61
LIG1-213ENST00000596672 SPATA6Q9NWH7 488 aaPredicted RBP11.24□□□□□ -0.61
LIG1-213ENST00000596672 EML5Q05BV3 1969 aa11.24□□□□□ -0.61
LIG1-213ENST00000596672 HELZP42694 1942 aaKnown RBP11.23□□□□□ -0.61
LIG1-213ENST00000596672 LRRIQ3A6PVS8 624 aaPredicted RBP11.23□□□□□ -0.61
LIG1-213ENST00000596672 ZNF263O14978 683 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 C4BPAP04003 597 aaKnown RBP11.23□□□□□ -0.61
LIG1-213ENST00000596672 ARSAP15289 507 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 RFX1P22670 979 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 RPS9P46781 194 aaKnown RBP11.23□□□□□ -0.61
LIG1-213ENST00000596672 CDH8P55286 799 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 CLDN10P78369 228 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 AMPD3Q01432 767 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 CSTF1Q05048 431 aaKnown RBP11.23□□□□□ -0.61
LIG1-213ENST00000596672 KNOP1Q1ED39 458 aaKnown RBP11.23□□□□□ -0.61
LIG1-213ENST00000596672 TDRD10Q5VZ19 366 aaKnown RBP11.23□□□□□ -0.61
LIG1-213ENST00000596672 ATL3Q6DD88 541 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 PAQR9Q6ZVX9 377 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 DCP1BQ8IZD4 617 aaKnown RBP11.23□□□□□ -0.61
LIG1-213ENST00000596672 CMTM8Q8IZV2 173 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 TMEM86AQ8N2M4 240 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 MAB21L3Q8N8X9 362 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 XXYLT1Q8NBI6 393 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 FAM200AQ8TCP9 573 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 PARD3BQ8TEW8 1205 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 C2orf15Q8WU43 125 aaKnown RBP11.23□□□□□ -0.61
LIG1-213ENST00000596672 FAM3CQ92520 227 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 EZH1Q92800 747 aaPredicted RBP11.23□□□□□ -0.61
LIG1-213ENST00000596672 IRF7Q92985 503 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 MYRFLQ96LU7 910 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 SYT15Q9BQS2 421 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 BCO2Q9BYV7 579 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 GPR88Q9GZN0 384 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 CHRDQ9H2X0 955 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 LMAN1LQ9HAT1 526 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 GCNT4Q9P109 453 aa11.23□□□□□ -0.61
LIG1-213ENST00000596672 MAGED2Q9UNF1 606 aaPredicted RBP11.23□□□□□ -0.61
LIG1-213ENST00000596672 C2orf78A6NCI8 922 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 SPECC1L-ADORA2AF8WAN1 911 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 CLDN5O00501 218 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 KIAA0391O15091 583 aaKnown RBP11.22□□□□□ -0.61
LIG1-213ENST00000596672 LILRB5O75023 590 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 UBE4BO95155 1302 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 BDNFP23560 247 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 CTHP32929 405 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 RAP1GAPP47736 663 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 PGFP49763 221 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 TSPY1Q01534 308 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 SATB1Q01826 763 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 DPYDQ12882 1025 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 CFAP221Q4G0U5 840 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 KIAA1549LQ6ZVL6 1849 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 ITIH5Q86UX2 942 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 MON1AQ86VX9 555 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 ZBTB44Q8NCP5 570 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 PCED1BQ96HM7 432 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 ANKRD36BP1Q96IX9 119 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 B3GNT5Q9BYG0 378 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 LRRC27Q9C0I9 530 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 SMYD3Q9H7B4 428 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 MAGEF1Q9HAY2 307 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 ABCB6Q9NP58 842 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 GKN1Q9NS71 199 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 FAM13BQ9NYF5 915 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 HMGXB4Q9UGU5 601 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 CHD8Q9HCK8 2581 aa11.22□□□□□ -0.61
LIG1-213ENST00000596672 ABCA7Q8IZY2 2146 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 MYH10P35580 1976 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 K7ESF4 209 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 TACC1O75410 805 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 TNNC2P02585 160 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 HSP90AA1P07900 732 aaKnown RBP11.21□□□□□ -0.61
LIG1-213ENST00000596672 TNNI1P19237 187 aa11.21□□□□□ -0.61
LIG1-213ENST00000596672 TGM1P22735 817 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms