RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 CCNE1P24864 410 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 GCLMP48507 274 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 GPR15P49685 360 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 PFKPQ01813 784 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 PPP3CAQ08209 521 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 TANGO2Q6ICL3 276 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 SCARA5Q6ZMJ2 495 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 ZSCAN18Q8TBC5 510 aaPredicted RBP17.3■□□□□ 0.36
TRIM28-206ENST00000595974 MYCBPAPQ8TBZ2 947 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 E2F7Q96AV8 911 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 DHTKD1Q96HY7 919 aaPredicted RBP17.3■□□□□ 0.36
TRIM28-206ENST00000595974 CEP295NLQ96MC4 621 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 ZSWIM3Q96MP5 696 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 ATXN3LQ9H3M9 355 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 IL21Q9HBE4 155 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 TMEM8AQ9HCN3 771 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 ARHGEF3Q9NR81 526 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 MAGEC2Q9UBF1 373 aaPredicted RBP17.3■□□□□ 0.36
TRIM28-206ENST00000595974 UXTQ9UBK9 157 aaPredicted RBP17.3■□□□□ 0.36
TRIM28-206ENST00000595974 ZMYM5Q9UJ78 669 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 NME7Q9Y5B8 376 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 KIF26AQ9ULI4 1882 aaPredicted RBP17.3■□□□□ 0.36
TRIM28-206ENST00000595974 COL4A2P08572 1712 aa17.3■□□□□ 0.36
TRIM28-206ENST00000595974 CACNA1HO95180 2353 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 KRBA1A5PL33 1030 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 STX10O60499 249 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 NOL4O94818 638 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 PTPN1P18031 435 aaKnown RBP17.29■□□□□ 0.36
TRIM28-206ENST00000595974 PMS1P54277 932 aaKnown RBP17.29■□□□□ 0.36
TRIM28-206ENST00000595974 VCPP55072 806 aaKnown RBP17.29■□□□□ 0.36
TRIM28-206ENST00000595974 GPC5P78333 572 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 CYP27A1Q02318 531 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 MORC3Q14149 939 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 DDR2Q16832 855 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 MDH1BQ5I0G3 518 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 CWF19L1Q69YN2 538 aaKnown RBP17.29■□□□□ 0.36
TRIM28-206ENST00000595974 ANKRD40Q6AI12 368 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 ASTLQ6HA08 431 aaPredicted RBP17.29■□□□□ 0.36
TRIM28-206ENST00000595974 SCN4BQ8IWT1 228 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 B3GALNT2Q8NCR0 500 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 DEPDC1BQ8WUY9 529 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 EEF2KMTQ96G04 330 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 TRMT2BQ96GJ1 504 aaKnown RBP17.29■□□□□ 0.36
TRIM28-206ENST00000595974 PCED1BQ96HM7 432 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 PRRX2Q99811 253 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 CA14Q9ULX7 337 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 F5P12259 2224 aa17.29■□□□□ 0.36
TRIM28-206ENST00000595974 HELZP42694 1942 aaKnown RBP17.28■□□□□ 0.36
TRIM28-206ENST00000595974 TRIM49BA6NDI0 452 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 BDNFP23560 247 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 AVPR2P30518 371 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 RAP1GAPP47736 663 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 MXI1P50539 228 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 CLCN5P51795 746 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 NUBP1P53384 320 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 NLRP12P59046 1061 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 NOP14P78316 857 aaKnown RBP17.28■□□□□ 0.36
TRIM28-206ENST00000595974 STXBP5Q5T5C0 1151 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 GPR158Q5T848 1215 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 SDHAF4Q5VUM1 108 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 KRT39Q6A163 491 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 ISM2Q6H9L7 571 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 FOXR2Q6PJQ5 311 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 TRIML1Q8N9V2 468 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 CCDC150Q8NCX0 1101 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 FLCNQ8NFG4 579 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 TAS1R2Q8TE23 839 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 TNIP3Q96KP6 325 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 SPATA17Q96L03 361 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 PLA2G2FQ9BZM2 168 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 ELOVL4Q9GZR5 314 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 SDCBP2Q9H190 292 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 DPEP3Q9H4B8 488 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 TASP1Q9H6P5 420 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 MMRN2Q9H8L6 949 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 PATJQ8NI35 1801 aa17.28■□□□□ 0.36
TRIM28-206ENST00000595974 ATP8B3O60423 1300 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 SLC38A8A6NNN8 435 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 TRIM66O15016 1216 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 CD44P16070 742 aaKnown RBP17.27■□□□□ 0.36
TRIM28-206ENST00000595974 NPR3P17342 541 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 PSMC3P17980 439 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 AOC1P19801 751 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 BMP6P22004 513 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 RFX1P22670 979 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 DDX6P26196 483 aaKnown RBP eCLIP17.27■□□□□ 0.361e-14■□□□□ 9.8
TRIM28-206ENST00000595974 ANXA13P27216 316 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 WEE1P30291 646 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 ASPAP45381 313 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 CDH8P55286 799 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 CYP4F8P98187 520 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 SPOPLQ6IQ16 392 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 PHLDB3Q6NSJ2 640 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 VITQ6UXI7 678 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 STKLD1Q8NE28 680 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 DNASE1L2Q92874 299 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 ELMO3Q96BJ8 720 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 SHDQ96IW2 340 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 MYRFLQ96LU7 910 aa17.27■□□□□ 0.36
TRIM28-206ENST00000595974 CEP63Q96MT8 703 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms