RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 UBXN2BQ14CS0 331 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 NFIL3Q16649 462 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 CCDC142Q17RM4 750 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 ZNF699Q32M78 642 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 SDHAF4Q5VUM1 108 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 VSTM1Q6UX27 236 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 ZNF852Q6ZMS4 543 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 ALYREFQ86V81 257 aaKnown RBP16.32■□□□□ 0.2
TRIM28-203ENST00000593582 SCN4BQ8IWT1 228 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 OR6B3Q8NGW1 331 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 MYCBPAPQ8TBZ2 947 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 TMC2Q8TDI7 906 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 MYLPFQ96A32 169 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 MRPL45Q9BRJ2 306 aaKnown RBP16.32■□□□□ 0.2
TRIM28-203ENST00000593582 VRTNQ9H8Y1 702 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 CRTAC1Q9NQ79 661 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 TRPV5Q9NQA5 729 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 FAM86C1Q9NVL1 165 aa16.32■□□□□ 0.2
TRIM28-203ENST00000593582 UXTQ9UBK9 157 aaPredicted RBP16.32■□□□□ 0.2
TRIM28-203ENST00000593582 MRPS17Q9Y2R5 130 aaKnown RBP16.32■□□□□ 0.2
TRIM28-203ENST00000593582 DDX6P26196 483 aaKnown RBP eCLIP16.31■□□□□ 0.22e-8■□□□□ 8.4
TRIM28-203ENST00000593582 WEE1P30291 646 aa16.31■□□□□ 0.2
TRIM28-203ENST00000593582 MAGEA11P43364 429 aa16.31■□□□□ 0.2
TRIM28-203ENST00000593582 MRE11P49959 708 aa16.31■□□□□ 0.2
TRIM28-203ENST00000593582 DLG4P78352 724 aa16.31■□□□□ 0.2
TRIM28-203ENST00000593582 CYP27A1Q02318 531 aa16.31■□□□□ 0.2
TRIM28-203ENST00000593582 FAM160A1Q05DH4 1040 aa16.31■□□□□ 0.2
TRIM28-203ENST00000593582 FCHO2Q0JRZ9 810 aa16.31■□□□□ 0.2
TRIM28-203ENST00000593582 ANGPT1Q15389 498 aa16.31■□□□□ 0.2
TRIM28-203ENST00000593582 ZNF667Q5HYK9 610 aa16.31■□□□□ 0.2
TRIM28-203ENST00000593582 INTS8Q75QN2 995 aaKnown RBP16.31■□□□□ 0.2
TRIM28-203ENST00000593582 GPIHBP1Q8IV16 184 aa16.31■□□□□ 0.2
TRIM28-203ENST00000593582 RSPRY1Q96DX4 576 aa16.31■□□□□ 0.2
TRIM28-203ENST00000593582 NELL2Q99435 816 aa16.31■□□□□ 0.2
TRIM28-203ENST00000593582 OSBPL6Q9BZF3 934 aa16.31■□□□□ 0.2
TRIM28-203ENST00000593582 OBP2AQ9NY56 170 aa16.31■□□□□ 0.2
TRIM28-203ENST00000593582 HOOK1Q9UJC3 728 aaKnown RBP16.31■□□□□ 0.2
TRIM28-203ENST00000593582 VPS13AQ96RL7 3174 aa16.31■□□□□ 0.2
TRIM28-203ENST00000593582 FAM170BA6NMN3 283 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 SLC38A8A6NNN8 435 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 A8MXQ7 604 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 MAN2B1O00754 1011 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 CHADO15335 359 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 AKAP3O75969 853 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 NOL4O94818 638 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 SMC2O95347 1197 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 F11P03951 625 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 KRT13P13646 458 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 P4HA1P13674 534 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 CD72P21854 359 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 BDNFP23560 247 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 AVPR1AP37288 418 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 GRIK1P39086 918 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 VAMP7P51809 220 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 ADAM9Q13443 819 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 SGSM1Q2NKQ1 1148 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 MDH1BQ5I0G3 518 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 TMEM150AQ86TG1 271 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 CMTM8Q8IZV2 173 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 STKLD1Q8NE28 680 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 ENGASEQ8NFI3 743 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 CSGALNACT1Q8TDX6 532 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 MRPS31Q92665 395 aaKnown RBP16.3■□□□□ 0.2
TRIM28-203ENST00000593582 TRMT2BQ96GJ1 504 aaKnown RBP16.3■□□□□ 0.2
TRIM28-203ENST00000593582 PCED1BQ96HM7 432 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 MYRFLQ96LU7 910 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 CEP295NLQ96MC4 621 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 PHOX2BQ99453 314 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 SLC46A2Q9BY10 475 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 BCO2Q9BYV7 579 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 LTB4R2Q9NPC1 389 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 DLGAP2Q9P1A6 1054 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 PIEZO1Q92508 2521 aa16.3■□□□□ 0.2
TRIM28-203ENST00000593582 CACNA1HO95180 2353 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 NCANO14594 1321 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 SOBPA7XYQ1 873 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 NCAM2O15394 837 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 VNN1O95497 513 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 PRAMEF12O95522 483 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 GLULP15104 373 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 PTPN1P18031 435 aaKnown RBP16.29■□□□□ 0.2
TRIM28-203ENST00000593582 ANXA13P27216 316 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 PSMC2P35998 433 aaKnown RBP16.29■□□□□ 0.2
TRIM28-203ENST00000593582 ZACNQ401N2 412 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 SV2AQ7L0J3 742 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 FAM186BQ8IYM0 893 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 SMYD4Q8IYR2 804 aaPredicted RBP16.29■□□□□ 0.2
TRIM28-203ENST00000593582 MAB21L3Q8N8X9 362 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 TAF4BQ92750 862 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 SPATA17Q96L03 361 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 TIGD1Q96MW7 591 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 GSDMAQ96QA5 445 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 SMYD3Q9H7B4 428 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 THG1LQ9NWX6 298 aaKnown RBP16.29■□□□□ 0.2
TRIM28-203ENST00000593582 MTF2Q9Y483 593 aaPredicted RBP16.29■□□□□ 0.2
TRIM28-203ENST00000593582 PIAS3Q9Y6X2 628 aa16.29■□□□□ 0.2
TRIM28-203ENST00000593582 ARNTLO00327 626 aa16.28■□□□□ 0.2
TRIM28-203ENST00000593582 TRIM66O15016 1216 aa16.28■□□□□ 0.2
TRIM28-203ENST00000593582 LRRN2O75325 713 aa16.28■□□□□ 0.2
TRIM28-203ENST00000593582 PIK3CAP42336 1068 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms