RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 CEP250Q9BV73 2442 aa11.2□□□□□ -0.62
VPS4B-207ENST00000591519 DMXL1Q9Y485 3027 aa11.2□□□□□ -0.62
VPS4B-207ENST00000591519 SLC38A8A6NNN8 435 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 GABRDO14764 452 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 KIAA0391O15091 583 aaKnown RBP11.19□□□□□ -0.62
VPS4B-207ENST00000591519 EXTL3O43909 919 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 GCNT3O95395 438 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 PRAMEF12O95522 483 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 ZSCAN22P10073 491 aaPredicted RBP11.19□□□□□ -0.62
VPS4B-207ENST00000591519 DDX6P26196 483 aaKnown RBP eCLIP11.19□□□□□ -0.62
VPS4B-207ENST00000591519 CNR2P34972 360 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 CASP5P51878 434 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 BECN1Q14457 450 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 NFE2Q16621 373 aaPredicted RBP11.19□□□□□ -0.62
VPS4B-207ENST00000591519 TXNDC11Q6PKC3 985 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 LIAT1Q6ZQX7 453 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 DPH6Q7L8W6 267 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 DGLUCYQ7Z3D6 616 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 CMTM8Q8IZV2 173 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 TMEM86AQ8N2M4 240 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 PDCL2Q8N4E4 241 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 ZSWIM2Q8NEG5 633 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 FAM200AQ8TCP9 573 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 USP28Q96RU2 1077 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 PKMYT1Q99640 499 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 FAM83CQ9BQN1 747 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 ZSCAN16Q9H4T2 348 aaPredicted RBP11.19□□□□□ -0.62
VPS4B-207ENST00000591519 ABCB6Q9NP58 842 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 TMLHEQ9NVH6 421 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 THG1LQ9NWX6 298 aaKnown RBP11.19□□□□□ -0.62
VPS4B-207ENST00000591519 GTSE1Q9NYZ3 720 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 TBC1D7Q9P0N9 293 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 TFIP11Q9UBB9 837 aaKnown RBP11.19□□□□□ -0.62
VPS4B-207ENST00000591519 ITGA11Q9UKX5 1188 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 AGAP1Q9UPQ3 857 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 PCDHB5Q9Y5E4 795 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 TCHHQ07283 1943 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 DENND4CQ5VZ89 1909 aa11.19□□□□□ -0.62
VPS4B-207ENST00000591519 A0A087X0B3 334 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 PRR5-ARHGAP8B1AHC4 643 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 K7ESF4 209 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 ADH1BP00325 375 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 ITGB3P05106 788 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 CSH1P0DML2 217 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 CSH2P0DML3 217 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 IDEP14735 1019 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 POLR2BP30876 1174 aaKnown RBP11.18□□□□□ -0.62
VPS4B-207ENST00000591519 STAT6P42226 847 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 SOX9P48436 509 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 NASPP49321 788 aaPredicted RBP11.18□□□□□ -0.62
VPS4B-207ENST00000591519 NLRP12P59046 1061 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 RBP5P82980 135 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 ARHGAP8P85298 464 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 CYP4F8P98187 520 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 TFAMQ00059 246 aaKnown RBP11.18□□□□□ -0.62
VPS4B-207ENST00000591519 TSPY1Q01534 308 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 SATB1Q01826 763 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 CCINQ13939 588 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 TAF12Q16514 161 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 ITPRIPL2Q3MIP1 535 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 LIMS2Q7Z4I7 341 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 MON1AQ86VX9 555 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 SYCP3Q8IZU3 236 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 CSGALNACT2Q8N6G5 542 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 GIPC2Q8TF65 315 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 SAAL1Q96ER3 474 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 ZFYVE19Q96K21 471 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 MYRFLQ96LU7 910 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 GCNAQ96QF7 691 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 CBWD1Q9BRT8 395 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 PANK2Q9BZ23 570 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 GKN1Q9NS71 199 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 TDP1Q9NUW8 608 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 PANK4Q9NVE7 773 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 KBTBD4Q9NVX7 518 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 DDX43Q9NXZ2 648 aaKnown RBP11.18□□□□□ -0.62
VPS4B-207ENST00000591519 ABI2Q9NYB9 513 aaPredicted RBP11.18□□□□□ -0.62
VPS4B-207ENST00000591519 RBAKQ9NYW8 714 aaPredicted RBP11.18□□□□□ -0.62
VPS4B-207ENST00000591519 L1RE1Q9UN81 338 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 DNAH14Q0VDD8 3507 aa11.18□□□□□ -0.62
VPS4B-207ENST00000591519 HUS1O60921 280 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 LRP3O75074 770 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 F13A1P00488 732 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 LHX1P48742 406 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 RPL10AP62906 217 aaKnown RBP11.17□□□□□ -0.62
VPS4B-207ENST00000591519 MYL7Q01449 175 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 LMNB2Q03252 620 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 TNK2Q07912 1038 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 ZNF268Q14587 947 aaPredicted RBP11.17□□□□□ -0.62
VPS4B-207ENST00000591519 STK38Q15208 465 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 RSPO4Q2I0M5 234 aaPredicted RBP11.17□□□□□ -0.62
VPS4B-207ENST00000591519 SOWAHAQ2M3V2 549 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 CFAP221Q4G0U5 840 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 INTS6LQ5JSJ4 861 aaKnown RBP11.17□□□□□ -0.62
VPS4B-207ENST00000591519 SCARA3Q6AZY7 606 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 LAIR1Q6GTX8 287 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 CNNM4Q6P4Q7 775 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 FAM171BQ6P995 826 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 LONP2Q86WA8 852 aa11.17□□□□□ -0.62
VPS4B-207ENST00000591519 CCDC65Q8IXS2 484 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms