RNA–Protein interactions for RNA: ENST00000589867.2

MBD1-221, Transcript of methyl-CpG binding domain protein 1, human

TSL 3

Gene MBD1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD1-221	ENST00000589867	OR6B3	Q8NGW1	331 aa		18.49	■□□□□ 0.55
MBD1-221	ENST00000589867	MYCBPAP	Q8TBZ2	947 aa		18.49	■□□□□ 0.55
MBD1-221	ENST00000589867	FUBP3	Q96I24	572 aa	Known RBP eCLIP	18.49	■□□□□ 0.55
MBD1-221	ENST00000589867	TSG101	Q99816	390 aa		18.49	■□□□□ 0.55
MBD1-221	ENST00000589867	KXD1	Q9BQD3	176 aa		18.49	■□□□□ 0.55
MBD1-221	ENST00000589867	BCO2	Q9BYV7	579 aa		18.49	■□□□□ 0.55
MBD1-221	ENST00000589867	MMRN2	Q9H8L6	949 aa		18.49	■□□□□ 0.55
MBD1-221	ENST00000589867	COL4A3	Q01955	1670 aa		18.49	■□□□□ 0.55
MBD1-221	ENST00000589867	ANAPC1	Q9H1A4	1944 aa		18.49	■□□□□ 0.55
MBD1-221	ENST00000589867	ZNF638	Q14966	1978 aa	Known RBP	18.48	■□□□□ 0.55
MBD1-221	ENST00000589867	KMT2E	Q8IZD2	1858 aa		18.48	■□□□□ 0.55
MBD1-221	ENST00000589867	TADA3	O75528	432 aa		18.48	■□□□□ 0.55
MBD1-221	ENST00000589867	F11	P03951	625 aa		18.48	■□□□□ 0.55
MBD1-221	ENST00000589867	PTPN1	P18031	435 aa	Known RBP	18.48	■□□□□ 0.55
MBD1-221	ENST00000589867	PIK3CA	P42336	1068 aa		18.48	■□□□□ 0.55
MBD1-221	ENST00000589867	MAGEA11	P43364	429 aa		18.48	■□□□□ 0.55
MBD1-221	ENST00000589867	STX17	P56962	302 aa		18.48	■□□□□ 0.55
MBD1-221	ENST00000589867	MDH1B	Q5I0G3	518 aa		18.48	■□□□□ 0.55
MBD1-221	ENST00000589867	PAQR9	Q6ZVX9	377 aa		18.48	■□□□□ 0.55
MBD1-221	ENST00000589867	TAF4B	Q92750	862 aa		18.48	■□□□□ 0.55
MBD1-221	ENST00000589867	SLC35C1	Q96A29	364 aa		18.48	■□□□□ 0.55
MBD1-221	ENST00000589867	RSPRY1	Q96DX4	576 aa		18.48	■□□□□ 0.55
MBD1-221	ENST00000589867	ASB16	Q96NS5	453 aa		18.48	■□□□□ 0.55
MBD1-221	ENST00000589867	B3GNT5	Q9BYG0	378 aa		18.48	■□□□□ 0.55
MBD1-221	ENST00000589867	SNX25	Q9H3E2	840 aa		18.48	■□□□□ 0.55
MBD1-221	ENST00000589867	CTNND2	Q9UQB3	1225 aa		18.48	■□□□□ 0.55
MBD1-221	ENST00000589867	F5	P12259	2224 aa		18.47	■□□□□ 0.55
MBD1-221	ENST00000589867	NOL4	O94818	638 aa		18.47	■□□□□ 0.55
MBD1-221	ENST00000589867	BDNF	P23560	247 aa		18.47	■□□□□ 0.55
MBD1-221	ENST00000589867	GABRR2	P28476	465 aa		18.47	■□□□□ 0.55
MBD1-221	ENST00000589867	NOP14	P78316	857 aa	Known RBP	18.47	■□□□□ 0.55
MBD1-221	ENST00000589867	KRT39	Q6A163	491 aa		18.47	■□□□□ 0.55
MBD1-221	ENST00000589867	FILIP1	Q7Z7B0	1213 aa		18.47	■□□□□ 0.55
MBD1-221	ENST00000589867	SPATA2L	Q8IUW3	424 aa	Predicted RBP	18.47	■□□□□ 0.55
MBD1-221	ENST00000589867	TRIML1	Q8N9V2	468 aa		18.47	■□□□□ 0.55
MBD1-221	ENST00000589867	B3GALNT2	Q8NCR0	500 aa		18.47	■□□□□ 0.55
MBD1-221	ENST00000589867	GPT2	Q8TD30	523 aa		18.47	■□□□□ 0.55
MBD1-221	ENST00000589867	WHAMM	Q8TF30	809 aa		18.47	■□□□□ 0.55
MBD1-221	ENST00000589867	CEP63	Q96MT8	703 aa		18.47	■□□□□ 0.55
MBD1-221	ENST00000589867	TWNK	Q96RR1	684 aa		18.47	■□□□□ 0.55
MBD1-221	ENST00000589867	TRPV4	Q9HBA0	871 aa		18.47	■□□□□ 0.55
MBD1-221	ENST00000589867	COQ4	Q9Y3A0	265 aa		18.47	■□□□□ 0.55
MBD1-221	ENST00000589867	NUP210	Q8TEM1	1887 aa	Predicted RBP	18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	KRBA1	A5PL33	1030 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867		A8MXQ7	604 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	CLDN5	O00501	218 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	ECI2	O75521	394 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	SRF	P11831	508 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	NPR3	P17342	541 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	PPP1R2	P41236	205 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	MXI1	P50539	228 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	GPC5	P78333	572 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	CYP4F8	P98187	520 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	ORC1	Q13415	861 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	STIM1	Q13586	685 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	MTSS1L	Q765P7	747 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	ITIH5	Q86UX2	942 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	LRRC3B	Q96PB8	259 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	ZNF518B	Q9C0D4	1074 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	SLC2A4RG	Q9NR83	387 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	MAGEC2	Q9UBF1	373 aa	Predicted RBP	18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	CACNA1H	O95180	2353 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	COL4A2	P08572	1712 aa		18.46	■□□□□ 0.55
MBD1-221	ENST00000589867	SLC38A8	A6NNN8	435 aa		18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	COL9A1	P20849	921 aa		18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	VIPR2	P41587	438 aa		18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	NDST1	P52848	882 aa		18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	NLRP12	P59046	1061 aa		18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	USP46	P62068	366 aa		18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	INCA1	Q0VD86	236 aa		18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	PAK1	Q13153	545 aa		18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	VEPH1	Q14D04	833 aa		18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	C4orf50	Q6ZRC1	276 aa		18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	CRYBG2	Q8N1P7	616 aa		18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	FAM200A	Q8TCP9	573 aa		18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	SMARCD2	Q92925	531 aa		18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	TATDN2	Q93075	761 aa		18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	PBXIP1	Q96AQ6	731 aa		18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	MYRFL	Q96LU7	910 aa		18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	ARMCX3	Q9UH62	379 aa	Predicted RBP	18.45	■□□□□ 0.54
MBD1-221	ENST00000589867	CFH	P08603	1231 aa		18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	VCP	P55072	806 aa	Known RBP	18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	RPL10A	P62906	217 aa	Known RBP	18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	CYP27A1	Q02318	531 aa		18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	MAPRE1	Q15691	268 aa	Known RBP	18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	DCAF17	Q5H9S7	520 aa	Predicted RBP	18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	CWF19L1	Q69YN2	538 aa	Known RBP	18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	VSTM1	Q6UX27	236 aa		18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	VIT	Q6UXI7	678 aa		18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	FRMD5	Q7Z6J6	570 aa		18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	ACOT1	Q86TX2	421 aa		18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	GPIHBP1	Q8IV16	184 aa		18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	SCN4B	Q8IWT1	228 aa		18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	FUK	Q8N0W3	1084 aa		18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	FBXL13	Q8NEE6	735 aa		18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	ELSPBP1	Q96BH3	223 aa		18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	TRMT2B	Q96GJ1	504 aa	Known RBP	18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	SPATA17	Q96L03	361 aa		18.44	■□□□□ 0.54
MBD1-221	ENST00000589867	ARID3A	Q99856	593 aa		18.44	■□□□□ 0.54

Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms