RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 TRAIPQ9BWF2 469 aa14.97□□□□□ -0.01
LIG3-205ENST00000585941 RNF39Q9H2S5 420 aa14.97□□□□□ -0.01
LIG3-205ENST00000585941 SNX25Q9H3E2 840 aa14.97□□□□□ -0.01
LIG3-205ENST00000585941 PLEKHA4Q9H4M7 779 aa14.97□□□□□ -0.01
LIG3-205ENST00000585941 CREBZFQ9NS37 354 aa14.97□□□□□ -0.01
LIG3-205ENST00000585941 A8MXQ7 604 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 HUS1O60921 280 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 CAND2O75155 1236 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 GJB6O95452 261 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 ECEL1O95672 775 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 ERBB2P04626 1255 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 ELNP15502 786 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 ECHS1P30084 290 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 NFX1Q12986 1120 aaKnown RBP14.96□□□□□ -0.01
LIG3-205ENST00000585941 ARHGEF6Q15052 776 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 SPDYCQ5MJ68 293 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 ACOT1Q86TX2 421 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 ZDHHC17Q8IUH5 632 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 ZDHHC14Q8IZN3 488 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 TNIP3Q96KP6 325 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 PPP1R10Q96QC0 940 aaKnown RBP14.96□□□□□ -0.01
LIG3-205ENST00000585941 NCAPGQ9BPX3 1015 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 CYLDQ9NQC7 956 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 DDX20Q9UHI6 824 aaKnown RBP14.96□□□□□ -0.01
LIG3-205ENST00000585941 GIT1Q9Y2X7 761 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 SQORQ9Y6N5 450 aa14.96□□□□□ -0.01
LIG3-205ENST00000585941 TCRBV7S2A1N4TA0A589 114 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 F8VP50 259 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 H3BQF6 201 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 RNF8O76064 485 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 TJP3O95049 919 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 FAM153BP0C7A2 387 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 RALAP11233 206 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 DESP17661 470 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 GNL1P36915 607 aaPredicted RBP14.95□□□□□ -0.02
LIG3-205ENST00000585941 OGDHQ02218 1023 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 LMNB2Q03252 620 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 KLF1Q13351 362 aaPredicted RBP14.95□□□□□ -0.02
LIG3-205ENST00000585941 CCNG2Q16589 344 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 FAM153CQ494X1 144 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 PKDCCQ504Y2 493 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 CFAP58Q5T655 872 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 TTC27Q6P3X3 843 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 MRPL10Q7Z7H8 261 aaKnown RBP14.95□□□□□ -0.02
LIG3-205ENST00000585941 UBA3Q8TBC4 463 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 TRIM51Q9BSJ1 452 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 METTL5Q9NRN9 209 aaKnown RBP14.95□□□□□ -0.02
LIG3-205ENST00000585941 ASNSD1Q9NWL6 643 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 FAM153AQ9UHL3 310 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 EFR3BQ9Y2G0 817 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 THSD7BQ9C0I4 1608 aa14.95□□□□□ -0.02
LIG3-205ENST00000585941 MOXD2PA6NHM9 499 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 ZNF623O75123 536 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 GAS8O95995 478 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 KRT1P04264 644 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 CTSHP09668 335 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 SKIP12755 728 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 WARSP23381 471 aaKnown RBP14.94□□□□□ -0.02
LIG3-205ENST00000585941 THPOP40225 353 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 LILRA4P59901 499 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 TRADDQ15628 312 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 FAM26DQ5JW98 314 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 ZFYVE27Q5T4F4 411 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 PPP1R26Q5T8A7 1209 aaPredicted RBP14.94□□□□□ -0.02
LIG3-205ENST00000585941 FAM102AQ5T9C2 384 aaPredicted RBP14.94□□□□□ -0.02
LIG3-205ENST00000585941 DDX42Q86XP3 938 aaKnown RBP eCLIP14.94□□□□□ -0.02
LIG3-205ENST00000585941 ARRDC4Q8NCT1 418 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 ATL2Q8NHH9 583 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 SLITRK1Q96PX8 696 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 TSEN34Q9BSV6 310 aaKnown RBP14.94□□□□□ -0.02
LIG3-205ENST00000585941 SLC4A5Q9BY07 1137 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 DCLK3Q9C098 648 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 DPH5Q9H2P9 285 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 ST7Q9NRC1 585 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 NOD1Q9Y239 953 aa14.94□□□□□ -0.02
LIG3-205ENST00000585941 PTGESO14684 152 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 THP07101 528 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 PFKMP08237 780 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 PAX3P23760 479 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 PCK1P35558 622 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 MAP2K2P36507 400 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 SCNN1AP37088 669 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 GGCXP38435 758 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 ZNF143P52747 638 aaPredicted RBP14.93□□□□□ -0.02
LIG3-205ENST00000585941 BCAT1P54687 386 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 SOX4Q06945 474 aaPredicted RBP14.93□□□□□ -0.02
LIG3-205ENST00000585941 ITGA7Q13683 1181 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 PPP1R7Q15435 360 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 TFDP3Q5H9I0 405 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 TMEM110Q86TL2 294 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 IQCKQ8N0W5 287 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 C12orf29Q8N999 325 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 ANKRD52Q8NB46 1076 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 TSEN2Q8NCE0 465 aaKnown RBP14.93□□□□□ -0.02
LIG3-205ENST00000585941 JOSD2Q8TAC2 188 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 RAET1EQ8TD07 263 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 SLC35F5Q8WV83 523 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 KBTBD7Q8WVZ9 684 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 WNT8BQ93098 351 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 FMO2Q99518 471 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms