RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 TXNRD1Q16881 649 aa7.84□□□□□ -1.15
SS18-214ENST00000580003 ARHGAP40Q5TG30 622 aa7.84□□□□□ -1.15
SS18-214ENST00000580003 PEG10Q86TG7 708 aaKnown RBP7.84□□□□□ -1.15
SS18-214ENST00000580003 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.84□□□□□ -1.15
SS18-214ENST00000580003 SIMC1Q8NDZ2 872 aa7.84□□□□□ -1.15
SS18-214ENST00000580003 ZNF518BQ9C0D4 1074 aa7.84□□□□□ -1.15
SS18-214ENST00000580003 LRRC27Q9C0I9 530 aa7.84□□□□□ -1.15
SS18-214ENST00000580003 SACM1LQ9NTJ5 587 aa7.84□□□□□ -1.15
SS18-214ENST00000580003 SUV39H1O43463 412 aa7.83□□□□□ -1.16
SS18-214ENST00000580003 RHOP08100 348 aa7.83□□□□□ -1.16
SS18-214ENST00000580003 MAPK10P53779 464 aa7.83□□□□□ -1.16
SS18-214ENST00000580003 E2F2Q14209 437 aa7.83□□□□□ -1.16
SS18-214ENST00000580003 POLD3Q15054 466 aaPredicted RBP7.83□□□□□ -1.16
SS18-214ENST00000580003 TBCCQ15814 346 aa7.83□□□□□ -1.16
SS18-214ENST00000580003 MGAT5BQ3V5L5 792 aa7.83□□□□□ -1.16
SS18-214ENST00000580003 TEDDM1Q5T9Z0 273 aa7.83□□□□□ -1.16
SS18-214ENST00000580003 PBKQ96KB5 322 aa7.83□□□□□ -1.16
SS18-214ENST00000580003 MS4A7Q9GZW8 240 aaPredicted RBP7.83□□□□□ -1.16
SS18-214ENST00000580003 EHD3Q9NZN3 535 aa7.83□□□□□ -1.16
SS18-214ENST00000580003 OGDHLQ9ULD0 1010 aa7.83□□□□□ -1.16
SS18-214ENST00000580003 PPM1DO15297 605 aa7.82□□□□□ -1.16
SS18-214ENST00000580003 RHCEP18577 417 aa7.82□□□□□ -1.16
SS18-214ENST00000580003 RHDQ02161 417 aa7.82□□□□□ -1.16
SS18-214ENST00000580003 KRT17Q04695 432 aa7.82□□□□□ -1.16
SS18-214ENST00000580003 CNGA2Q16280 664 aa7.82□□□□□ -1.16
SS18-214ENST00000580003 GRASPQ7Z6J2 395 aaPredicted RBP7.82□□□□□ -1.16
SS18-214ENST00000580003 DGKHQ86XP1 1220 aa7.82□□□□□ -1.16
SS18-214ENST00000580003 ATRIPQ8WXE1 791 aa7.82□□□□□ -1.16
SS18-214ENST00000580003 TTC17Q96AE7 1141 aa7.82□□□□□ -1.16
SS18-214ENST00000580003 MESP1Q9BRJ9 268 aa7.82□□□□□ -1.16
SS18-214ENST00000580003 BHMT2Q9H2M3 363 aa7.82□□□□□ -1.16
SS18-214ENST00000580003 SMURF2Q9HAU4 748 aa7.82□□□□□ -1.16
SS18-214ENST00000580003 SLC17A6Q9P2U8 582 aa7.82□□□□□ -1.16
SS18-214ENST00000580003 CPNE7Q9UBL6 633 aa7.82□□□□□ -1.16
SS18-214ENST00000580003 SERTAD3Q9UJW9 196 aa7.82□□□□□ -1.16
SS18-214ENST00000580003 WDR27A2RRH5 827 aa7.81□□□□□ -1.16
SS18-214ENST00000580003 URI1O94763 535 aaPredicted RBP7.81□□□□□ -1.16
SS18-214ENST00000580003 MAP4K4O95819 1239 aaPredicted RBP7.81□□□□□ -1.16
SS18-214ENST00000580003 NR2F6P10588 404 aa7.81□□□□□ -1.16
SS18-214ENST00000580003 ZKSCAN1P17029 563 aaPredicted RBP7.81□□□□□ -1.16
SS18-214ENST00000580003 PEX2P28328 305 aa7.81□□□□□ -1.16
SS18-214ENST00000580003 CACNA2D1P54289 1103 aa7.81□□□□□ -1.16
SS18-214ENST00000580003 EIF2B5Q13144 721 aaKnown RBP7.81□□□□□ -1.16
SS18-214ENST00000580003 BMPR2Q13873 1038 aa7.81□□□□□ -1.16
SS18-214ENST00000580003 PLAC9Q5JTB6 97 aa7.81□□□□□ -1.16
SS18-214ENST00000580003 RGS7BPQ6MZT1 257 aaPredicted RBP7.81□□□□□ -1.16
SS18-214ENST00000580003 RAPGEF4Q8WZA2 1011 aa7.81□□□□□ -1.16
SS18-214ENST00000580003 APIPQ96GX9 242 aa7.81□□□□□ -1.16
SS18-214ENST00000580003 CCDC136Q96JN2 1154 aa7.81□□□□□ -1.16
SS18-214ENST00000580003 ZNF287Q9HBT7 754 aa7.81□□□□□ -1.16
SS18-214ENST00000580003 A1CFQ9NQ94 594 aaKnown RBP7.81□□□□□ -1.16
SS18-214ENST00000580003 AFF4Q9UHB7 1163 aaKnown RBP7.81□□□□□ -1.16
SS18-214ENST00000580003 NDRG4Q9ULP0 352 aaKnown RBP7.81□□□□□ -1.16
SS18-214ENST00000580003 VWC2LB2RUY7 222 aa7.8□□□□□ -1.16
SS18-214ENST00000580003 TLR5O60602 858 aa7.8□□□□□ -1.16
SS18-214ENST00000580003 PPFIA2O75334 1257 aa7.8□□□□□ -1.16
SS18-214ENST00000580003 NXPH3O95157 252 aa7.8□□□□□ -1.16
SS18-214ENST00000580003 TTLL1O95922 423 aa7.8□□□□□ -1.16
SS18-214ENST00000580003 MYF5P13349 255 aa7.8□□□□□ -1.16
SS18-214ENST00000580003 ZFXP17010 805 aaPredicted RBP7.8□□□□□ -1.16
SS18-214ENST00000580003 DTX2Q86UW9 622 aa7.8□□□□□ -1.16
SS18-214ENST00000580003 GAS2L3Q86XJ1 694 aa7.8□□□□□ -1.16
SS18-214ENST00000580003 DNAJC10Q8IXB1 793 aa7.8□□□□□ -1.16
SS18-214ENST00000580003 TIFAQ96CG3 184 aa7.8□□□□□ -1.16
SS18-214ENST00000580003 C8orf48Q96LL4 319 aa7.8□□□□□ -1.16
SS18-214ENST00000580003 SERHLQ9NQF3 203 aa7.8□□□□□ -1.16
SS18-214ENST00000580003 TMEM233B4DJY2 109 aa7.79□□□□□ -1.16
SS18-214ENST00000580003 hCG_1984214I3L0E3 225 aa7.79□□□□□ -1.16
SS18-214ENST00000580003 MGST3O14880 152 aa7.79□□□□□ -1.16
SS18-214ENST00000580003 SLC16A3O15427 465 aaKnown RBP7.79□□□□□ -1.16
SS18-214ENST00000580003 PDHA1P08559 390 aa7.79□□□□□ -1.16
SS18-214ENST00000580003 PLA1AQ53H76 456 aa7.79□□□□□ -1.16
SS18-214ENST00000580003 AKNAD1Q5T1N1 836 aa7.79□□□□□ -1.16
SS18-214ENST00000580003 ZNF618Q5T7W0 954 aa7.79□□□□□ -1.16
SS18-214ENST00000580003 DCAF12L1Q5VU92 463 aa7.79□□□□□ -1.16
SS18-214ENST00000580003 MAML1Q92585 1016 aa7.79□□□□□ -1.16
SS18-214ENST00000580003 NMD3Q96D46 503 aaKnown RBP7.79□□□□□ -1.16
SS18-214ENST00000580003 STK32BQ9NY57 414 aa7.79□□□□□ -1.16
SS18-214ENST00000580003 SSX2IPQ9Y2D8 614 aa7.79□□□□□ -1.16
SS18-214ENST00000580003 MRPS17Q9Y2R5 130 aaKnown RBP7.79□□□□□ -1.16
SS18-214ENST00000580003 TRIM43BA6NCK2 446 aa7.78□□□□□ -1.16
SS18-214ENST00000580003 LINC00473A8K010 186 aa7.78□□□□□ -1.16
SS18-214ENST00000580003 KIF3BO15066 747 aa7.78□□□□□ -1.16
SS18-214ENST00000580003 ALDH9A1P49189 494 aa7.78□□□□□ -1.16
SS18-214ENST00000580003 CLK3P49761 638 aaKnown RBP7.78□□□□□ -1.16
SS18-214ENST00000580003 FMO1Q01740 532 aa7.78□□□□□ -1.16
SS18-214ENST00000580003 MYO1EQ12965 1108 aa7.78□□□□□ -1.16
SS18-214ENST00000580003 SEMA5AQ13591 1074 aa7.78□□□□□ -1.16
SS18-214ENST00000580003 GALEQ14376 348 aa7.78□□□□□ -1.16
SS18-214ENST00000580003 FAM153CQ494X1 144 aa7.78□□□□□ -1.16
SS18-214ENST00000580003 ZNF280BQ86YH2 543 aa7.78□□□□□ -1.16
SS18-214ENST00000580003 SLC15A3Q8IY34 581 aa7.78□□□□□ -1.16
SS18-214ENST00000580003 RFKQ969G6 155 aa7.78□□□□□ -1.16
SS18-214ENST00000580003 TRIM43Q96BQ3 446 aaPredicted RBP7.78□□□□□ -1.16
SS18-214ENST00000580003 CRAMP1Q96RY5 1269 aa7.78□□□□□ -1.16
SS18-214ENST00000580003 ALG13Q9NP73 1137 aaKnown RBP7.78□□□□□ -1.16
SS18-214ENST00000580003 DKK3Q9UBP4 350 aa7.78□□□□□ -1.16
SS18-214ENST00000580003 PCDHGB6Q9Y5F9 930 aa7.78□□□□□ -1.16
SS18-214ENST00000580003 MBD3L4A6NDZ8 208 aaPredicted RBP7.77□□□□□ -1.17
SS18-214ENST00000580003 MBD3L3A6NE82 208 aaPredicted RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms