RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 AOC1P19801 751 aa25.52■■□□□ 1.68
SHMT1-206ENST00000579558 PIK3CAP42336 1068 aa25.52■■□□□ 1.68
SHMT1-206ENST00000579558 MAGEA11P43364 429 aa25.52■■□□□ 1.68
SHMT1-206ENST00000579558 CYP4F8P98187 520 aa25.52■■□□□ 1.68
SHMT1-206ENST00000579558 CYP27A1Q02318 531 aa25.52■■□□□ 1.68
SHMT1-206ENST00000579558 SCARA5Q6ZMJ2 495 aa25.52■■□□□ 1.68
SHMT1-206ENST00000579558 PRSS33Q8NF86 280 aa25.52■■□□□ 1.68
SHMT1-206ENST00000579558 TSG101Q99816 390 aa25.52■■□□□ 1.68
SHMT1-206ENST00000579558 MAGED2Q9UNF1 606 aaPredicted RBP25.52■■□□□ 1.68
SHMT1-206ENST00000579558 A8MXQ7 604 aa25.51■■□□□ 1.67
SHMT1-206ENST00000579558 CETN3O15182 167 aa25.51■■□□□ 1.67
SHMT1-206ENST00000579558 ENPEPQ07075 957 aa25.51■■□□□ 1.67
SHMT1-206ENST00000579558 SGSM1Q2NKQ1 1148 aa25.51■■□□□ 1.67
SHMT1-206ENST00000579558 MDH1BQ5I0G3 518 aa25.51■■□□□ 1.67
SHMT1-206ENST00000579558 VITQ6UXI7 678 aa25.51■■□□□ 1.67
SHMT1-206ENST00000579558 MYCBPAPQ8TBZ2 947 aa25.51■■□□□ 1.67
SHMT1-206ENST00000579558 DEPDC1BQ8WUY9 529 aa25.51■■□□□ 1.67
SHMT1-206ENST00000579558 EEF2KMTQ96G04 330 aa25.51■■□□□ 1.67
SHMT1-206ENST00000579558 PCED1BQ96HM7 432 aa25.51■■□□□ 1.67
SHMT1-206ENST00000579558 MKNK1Q9BUB5 465 aa25.51■■□□□ 1.67
SHMT1-206ENST00000579558 TRMT61BQ9BVS5 477 aaKnown RBP25.51■■□□□ 1.67
SHMT1-206ENST00000579558 SLC38A8A6NNN8 435 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 HLA-DRAP01903 254 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 P4HA1P13674 534 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 PSMC3P17980 439 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 PTPN1P18031 435 aaKnown RBP25.5■■□□□ 1.67
SHMT1-206ENST00000579558 BDNFP23560 247 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 RAP1GAPP47736 663 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 GCLMP48507 274 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 NUBP1P53384 320 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 CDH8P55286 799 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 MLF2Q15773 248 aaPredicted RBP25.5■■□□□ 1.67
SHMT1-206ENST00000579558 SLC44A4Q53GD3 710 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 ISM2Q6H9L7 571 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 ARID3BQ8IVW6 561 aaPredicted RBP25.5■■□□□ 1.67
SHMT1-206ENST00000579558 ADSSL1Q8N142 457 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 TAF4BQ92750 862 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 E2F7Q96AV8 911 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 SHDQ96IW2 340 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 DPEP3Q9H4B8 488 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 TASP1Q9H6P5 420 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 MMRN2Q9H8L6 949 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 BRD9Q9H8M2 597 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 MAN1B1Q9UKM7 699 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 WDFY4Q6ZS81 3184 aa25.5■■□□□ 1.67
SHMT1-206ENST00000579558 NUP210Q8TEM1 1887 aaPredicted RBP25.49■■□□□ 1.67
SHMT1-206ENST00000579558 NCANO14594 1321 aa25.49■■□□□ 1.67
SHMT1-206ENST00000579558 HEPACAM2A8MVW5 462 aa25.49■■□□□ 1.67
SHMT1-206ENST00000579558 PI15O43692 258 aa25.49■■□□□ 1.67
SHMT1-206ENST00000579558 NOL4O94818 638 aa25.49■■□□□ 1.67
SHMT1-206ENST00000579558 EPB41P11171 864 aaKnown RBP25.49■■□□□ 1.67
SHMT1-206ENST00000579558 NLRP12P59046 1061 aa25.49■■□□□ 1.67
SHMT1-206ENST00000579558 PPP3CAQ08209 521 aa25.49■■□□□ 1.67
SHMT1-206ENST00000579558 STIM1Q13586 685 aa25.49■■□□□ 1.67
SHMT1-206ENST00000579558 PHLDB3Q6NSJ2 640 aa25.49■■□□□ 1.67
SHMT1-206ENST00000579558 VSTM1Q6UX27 236 aa25.49■■□□□ 1.67
SHMT1-206ENST00000579558 GPIHBP1Q8IV16 184 aa25.49■■□□□ 1.67
SHMT1-206ENST00000579558 UXTQ9UBK9 157 aaPredicted RBP25.49■■□□□ 1.67
SHMT1-206ENST00000579558 PTPRDP23468 1912 aa25.49■■□□□ 1.67
SHMT1-206ENST00000579558 ASS1P00966 412 aaKnown RBP25.48■■□□□ 1.67
SHMT1-206ENST00000579558 F11P03951 625 aa25.48■■□□□ 1.67
SHMT1-206ENST00000579558 GDI1P31150 447 aa25.48■■□□□ 1.67
SHMT1-206ENST00000579558 HOXD11P31277 338 aaPredicted RBP25.48■■□□□ 1.67
SHMT1-206ENST00000579558 GRIK1P39086 918 aa25.48■■□□□ 1.67
SHMT1-206ENST00000579558 PTPN5P54829 565 aa25.48■■□□□ 1.67
SHMT1-206ENST00000579558 STARD6P59095 220 aa25.48■■□□□ 1.67
SHMT1-206ENST00000579558 PRKCQQ04759 706 aa25.48■■□□□ 1.67
SHMT1-206ENST00000579558 ANKRD40Q6AI12 368 aa25.48■■□□□ 1.67
SHMT1-206ENST00000579558 SPOPLQ6IQ16 392 aa25.48■■□□□ 1.67
SHMT1-206ENST00000579558 TMEM150AQ86TG1 271 aa25.48■■□□□ 1.67
SHMT1-206ENST00000579558 MFSD6LQ8IWD5 586 aa25.48■■□□□ 1.67
SHMT1-206ENST00000579558 B3GALNT2Q8NCR0 500 aa25.48■■□□□ 1.67
SHMT1-206ENST00000579558 DNASE1L2Q92874 299 aa25.48■■□□□ 1.67
SHMT1-206ENST00000579558 RSPRY1Q96DX4 576 aa25.48■■□□□ 1.67
SHMT1-206ENST00000579558 IMPG2Q9BZV3 1241 aa25.48■■□□□ 1.67
SHMT1-206ENST00000579558 SDCBP2Q9H190 292 aa25.48■■□□□ 1.67
SHMT1-206ENST00000579558 DENND4CQ5VZ89 1909 aa25.47■■□□□ 1.67
SHMT1-206ENST00000579558 DPYSL4O14531 572 aa25.47■■□□□ 1.67
SHMT1-206ENST00000579558 GALR2O43603 387 aaPredicted RBP25.47■■□□□ 1.67
SHMT1-206ENST00000579558 ANXA13P27216 316 aa25.47■■□□□ 1.67
SHMT1-206ENST00000579558 PMS1P54277 932 aaKnown RBP25.47■■□□□ 1.67
SHMT1-206ENST00000579558 FKBP3Q00688 224 aaKnown RBP25.47■■□□□ 1.67
SHMT1-206ENST00000579558 YAF2Q8IY57 180 aa25.47■■□□□ 1.67
SHMT1-206ENST00000579558 TAS1R2Q8TE23 839 aa25.47■■□□□ 1.67
SHMT1-206ENST00000579558 TRMT2BQ96GJ1 504 aaKnown RBP25.47■■□□□ 1.67
SHMT1-206ENST00000579558 TMEM8AQ9HCN3 771 aa25.47■■□□□ 1.67
SHMT1-206ENST00000579558 UTP3Q9NQZ2 479 aaKnown RBP eCLIP25.47■■□□□ 1.67
SHMT1-206ENST00000579558 OBSL1O75147 1896 aa25.47■■□□□ 1.67
SHMT1-206ENST00000579558 TRIM49BA6NDI0 452 aa25.46■■□□□ 1.67
SHMT1-206ENST00000579558 PSMA7O14818 248 aa25.46■■□□□ 1.67
SHMT1-206ENST00000579558 TRIM66O15016 1216 aa25.46■■□□□ 1.67
SHMT1-206ENST00000579558 GTF2H1P32780 548 aa25.46■■□□□ 1.67
SHMT1-206ENST00000579558 UBE2HP62256 183 aa25.46■■□□□ 1.67
SHMT1-206ENST00000579558 LRRC63Q05C16 580 aa25.46■■□□□ 1.67
SHMT1-206ENST00000579558 TCF15Q12870 199 aa25.46■■□□□ 1.67
SHMT1-206ENST00000579558 MRPS31Q92665 395 aaKnown RBP25.46■■□□□ 1.67
SHMT1-206ENST00000579558 IRF7Q92985 503 aa25.46■■□□□ 1.67
SHMT1-206ENST00000579558 TNIP3Q96KP6 325 aa25.46■■□□□ 1.67
SHMT1-206ENST00000579558 SPATA17Q96L03 361 aa25.46■■□□□ 1.67
SHMT1-206ENST00000579558 MYRFLQ96LU7 910 aa25.46■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms