RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 SLC2A14Q8TDB8 520 aa17.11■□□□□ 0.33
SS18-211ENST00000578954 PCED1BQ96HM7 432 aa17.11■□□□□ 0.33
SS18-211ENST00000578954 B3GALT6Q96L58 329 aa17.11■□□□□ 0.33
SS18-211ENST00000578954 TMEM209Q96SK2 561 aa17.11■□□□□ 0.33
SS18-211ENST00000578954 LPIN3Q9BQK8 851 aa17.11■□□□□ 0.33
SS18-211ENST00000578954 B3GNT5Q9BYG0 378 aa17.11■□□□□ 0.33
SS18-211ENST00000578954 ZBP1Q9H171 429 aa17.11■□□□□ 0.33
SS18-211ENST00000578954 LUC7LQ9NQ29 371 aaKnown RBP17.11■□□□□ 0.33
SS18-211ENST00000578954 SEPT11Q9NVA2 429 aaKnown RBP17.11■□□□□ 0.33
SS18-211ENST00000578954 PPP2R2CQ9Y2T4 447 aa17.11■□□□□ 0.33
SS18-211ENST00000578954 CEP83Q9Y592 693 aa17.11■□□□□ 0.33
SS18-211ENST00000578954 PCDHA13Q9Y5I0 950 aa17.11■□□□□ 0.33
SS18-211ENST00000578954 PDE4DIPQ5VU43 2346 aa17.1■□□□□ 0.33
SS18-211ENST00000578954 PTPRDP23468 1912 aa17.1■□□□□ 0.33
SS18-211ENST00000578954 M0QYV0 167 aa17.1■□□□□ 0.33
SS18-211ENST00000578954 PJA2O43164 708 aa17.1■□□□□ 0.33
SS18-211ENST00000578954 MYOGP15173 224 aa17.1■□□□□ 0.33
SS18-211ENST00000578954 CTNNB1P35222 781 aa17.1■□□□□ 0.33
SS18-211ENST00000578954 MAGEA1P43355 309 aa17.1■□□□□ 0.33
SS18-211ENST00000578954 BCAT1P54687 386 aa17.1■□□□□ 0.33
SS18-211ENST00000578954 UBE3AQ05086 875 aa17.1■□□□□ 0.33
SS18-211ENST00000578954 SMARCB1Q12824 385 aa17.1■□□□□ 0.33
SS18-211ENST00000578954 NAA35Q5VZE5 725 aa17.1■□□□□ 0.33
SS18-211ENST00000578954 FAM35AQ86V20 835 aa17.1■□□□□ 0.33
SS18-211ENST00000578954 DCP1BQ8IZD4 617 aaKnown RBP17.1■□□□□ 0.33
SS18-211ENST00000578954 MYLPFQ96A32 169 aa17.1■□□□□ 0.33
SS18-211ENST00000578954 PDCL3Q9H2J4 239 aa17.1■□□□□ 0.33
SS18-211ENST00000578954 TMLHEQ9NVH6 421 aa17.1■□□□□ 0.33
SS18-211ENST00000578954 HESX1Q9UBX0 185 aa17.1■□□□□ 0.33
SS18-211ENST00000578954 GTF3C4Q9UKN8 822 aa17.1■□□□□ 0.33
SS18-211ENST00000578954 YBX2Q9Y2T7 364 aaKnown RBP17.1■□□□□ 0.33
SS18-211ENST00000578954 ZSCAN12O43309 604 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 LILRB3O75022 631 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 URODP06132 367 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 CA3P07451 260 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 H2AFZP0C0S5 128 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 CTSAP10619 480 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 SSTR3P32745 418 aaPredicted RBP17.09■□□□□ 0.33
SS18-211ENST00000578954 RPL34P49207 117 aaKnown RBP17.09■□□□□ 0.33
SS18-211ENST00000578954 ERVK-21P61565 698 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 BST2Q10589 180 aaKnown RBP17.09■□□□□ 0.33
SS18-211ENST00000578954 RAB30Q15771 203 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 PSMD5Q16401 504 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 NFE2Q16621 373 aaPredicted RBP17.09■□□□□ 0.33
SS18-211ENST00000578954 PRSS55Q6UWB4 352 aaPredicted RBP17.09■□□□□ 0.33
SS18-211ENST00000578954 RSPO2Q6UXX9 243 aaPredicted RBP17.09■□□□□ 0.33
SS18-211ENST00000578954 H2AFVQ71UI9 128 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 MON1BQ7L1V2 547 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 PASD1Q8IV76 773 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 TDHQ8IZJ6 230 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 CCAR2Q8N163 923 aaKnown RBP17.09■□□□□ 0.33
SS18-211ENST00000578954 VPS52Q8N1B4 723 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 TXLNBQ8N3L3 684 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 C1orf131Q8NDD1 294 aaKnown RBP17.09■□□□□ 0.33
SS18-211ENST00000578954 STK32AQ8WU08 396 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 SLC35F5Q8WV83 523 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 RIN2Q8WYP3 895 aaPredicted RBP17.09■□□□□ 0.33
SS18-211ENST00000578954 FUBP3Q96I24 572 aaKnown RBP eCLIP17.09■□□□□ 0.33
SS18-211ENST00000578954 VCPIP1Q96JH7 1222 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 C17orf80Q9BSJ5 609 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 DUSP16Q9BY84 665 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 PBX4Q9BYU1 374 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 RXFP1Q9HBX9 757 aa17.09■□□□□ 0.33
SS18-211ENST00000578954 PLXNA4Q9HCM2 1894 aa17.08■□□□□ 0.33
SS18-211ENST00000578954 ANKRD62A6NC57 917 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 RCCD1A6NED2 376 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 CCP110O43303 1012 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 FTLP02792 175 aaPredicted RBP17.08■□□□□ 0.32
SS18-211ENST00000578954 NPR3P17342 541 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 MMP8P22894 467 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 ADORA2BP29275 332 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 NSFP46459 744 aaKnown RBP17.08■□□□□ 0.32
SS18-211ENST00000578954 PLA2G4AP47712 749 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 GALCP54803 685 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 GSCP56915 257 aaPredicted RBP17.08■□□□□ 0.32
SS18-211ENST00000578954 CREMQ03060 361 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 TAP1Q03518 808 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 C1QBPQ07021 282 aaKnown RBP17.08■□□□□ 0.32
SS18-211ENST00000578954 PTP4A2Q12974 167 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 GPR17Q13304 367 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 CFAP221Q4G0U5 840 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 KIAA1841Q6NSI8 718 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 C4orf50Q6ZRC1 276 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 REXO1L1PQ8IX06 675 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 MCOLN2Q8IZK6 566 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 SECISBP2LQ93073 1101 aaKnown RBP17.08■□□□□ 0.32
SS18-211ENST00000578954 SMARCD1Q96GM5 515 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 TGS1Q96RS0 853 aaKnown RBP17.08■□□□□ 0.32
SS18-211ENST00000578954 PACSIN1Q9BY11 444 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 CSNK1G1Q9HCP0 422 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 ABCB6Q9NP58 842 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 CYLDQ9NQC7 956 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.08■□□□□ 0.32
SS18-211ENST00000578954 FNIP2Q9P278 1114 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 CYTH4Q9UIA0 394 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 SSX2IPQ9Y2D8 614 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 IRAK3Q9Y616 596 aa17.08■□□□□ 0.32
SS18-211ENST00000578954 BTNL10A8MVZ5 291 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 CLDN5O00501 218 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 XPO1O14980 1071 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms