RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 SCUBE2Q9NQ36 999 aa11.11□□□□□ -0.63
CDH3-210ENST00000569117 MTRRQ9UBK8 725 aa11.11□□□□□ -0.63
CDH3-210ENST00000569117 CDH9Q9ULB4 789 aa11.11□□□□□ -0.63
CDH3-210ENST00000569117 MTUS1Q9ULD2 1270 aa11.11□□□□□ -0.63
CDH3-210ENST00000569117 SLC27A5Q9Y2P5 690 aa11.11□□□□□ -0.63
CDH3-210ENST00000569117 BACE2Q9Y5Z0 518 aa11.11□□□□□ -0.63
CDH3-210ENST00000569117 TRIOBPQ9H2D6 2365 aa11.11□□□□□ -0.63
CDH3-210ENST00000569117 PLXNA3P51805 1871 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 TMEM265A0A087WTH1 108 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 OR6C75A6NL08 312 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 H3BNC9 293 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 H7C4K7 107 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 CYP26A1O43174 497 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 RNF40O75150 1001 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 ACAT1P24752 427 aaKnown RBP11.1□□□□□ -0.63
CDH3-210ENST00000569117 LMO2P25791 158 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 GNA15P30679 374 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 BPIFB4P59827 614 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 TSPY1Q01534 308 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 CREMQ03060 361 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 GOLGA8FQ08AF8 430 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 GOLGA8DPQ0D2H9 430 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 ORC1Q13415 861 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 PTPN14Q15678 1187 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 PSMD5Q16401 504 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 CTXN3Q4LDR2 81 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 ZNF394Q53GI3 561 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 INTS6LQ5JSJ4 861 aaKnown RBP11.1□□□□□ -0.63
CDH3-210ENST00000569117 KIAA0319Q5VV43 1072 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 SLC8B1Q6J4K2 584 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 KIAA1841Q6NSI8 718 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 IRF2BP2Q7Z5L9 587 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 ACOT1Q86TX2 421 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 SLC47A2Q86VL8 602 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 LNX1Q8TBB1 728 aaPredicted RBP11.1□□□□□ -0.63
CDH3-210ENST00000569117 SPPL3Q8TCT6 385 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 RIN2Q8WYP3 895 aaPredicted RBP11.1□□□□□ -0.63
CDH3-210ENST00000569117 ZCWPW1Q9H0M4 648 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 DPEP3Q9H4B8 488 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 TLR9Q9NR96 1032 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.1□□□□□ -0.63
CDH3-210ENST00000569117 PUF60Q9UHX1 559 aaKnown RBP11.1□□□□□ -0.63
CDH3-210ENST00000569117 NOCTQ9UK39 431 aaKnown RBP11.1□□□□□ -0.63
CDH3-210ENST00000569117 KIAA1257Q9ULG3 409 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 SSX2IPQ9Y2D8 614 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 IRAK3Q9Y616 596 aa11.1□□□□□ -0.63
CDH3-210ENST00000569117 TRANK1O15050 2925 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 GRM6O15303 877 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 SERPING1P05155 500 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 PDGFRBP09619 1106 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 VDRP11473 427 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 CYP11B1P15538 503 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 DNAJB1P25685 340 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 PSMC1P62191 440 aaKnown RBP11.09□□□□□ -0.63
CDH3-210ENST00000569117 CDK17Q00537 523 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 ARID5AQ03989 594 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 PTK2Q05397 1052 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 STILQ15468 1287 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 MAPRE1Q15691 268 aaKnown RBP11.09□□□□□ -0.63
CDH3-210ENST00000569117 PUS10Q3MIT2 529 aaKnown RBP11.09□□□□□ -0.63
CDH3-210ENST00000569117 SGO2Q562F6 1265 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 HGSNATQ68CP4 663 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 ARHGAP17Q68EM7 881 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 WDR59Q6PJI9 974 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 PRSS55Q6UWB4 352 aaPredicted RBP11.09□□□□□ -0.63
CDH3-210ENST00000569117 CCDC186Q7Z3E2 898 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 NOP9Q86U38 636 aaKnown RBP11.09□□□□□ -0.63
CDH3-210ENST00000569117 OLIG1Q8TAK6 271 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 POF1BQ8WVV4 589 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 ARNTL2Q8WYA1 636 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 TCF25Q9BQ70 676 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 SYT11Q9BT88 431 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 LMAN2LQ9H0V9 348 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 ALG13Q9NP73 1137 aaKnown RBP11.09□□□□□ -0.63
CDH3-210ENST00000569117 CRTAC1Q9NQ79 661 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 MRPL17Q9NRX2 175 aaKnown RBP11.09□□□□□ -0.63
CDH3-210ENST00000569117 ZNHIT6Q9NWK9 470 aaKnown RBP11.09□□□□□ -0.63
CDH3-210ENST00000569117 FNIP2Q9P278 1114 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 FKBPLQ9UIM3 349 aa11.09□□□□□ -0.63
CDH3-210ENST00000569117 BZW2Q9Y6E2 419 aaKnown RBP11.09□□□□□ -0.63
CDH3-210ENST00000569117 CDH23Q9H251 3354 aa11.08□□□□□ -0.64
CDH3-210ENST00000569117 O00370 1275 aa11.08□□□□□ -0.64
CDH3-210ENST00000569117 FSCN2O14926 492 aa11.08□□□□□ -0.64
CDH3-210ENST00000569117 SNPHO15079 494 aa11.08□□□□□ -0.64
CDH3-210ENST00000569117 ATP2C2O75185 946 aa11.08□□□□□ -0.64
CDH3-210ENST00000569117 CD19P15391 556 aa11.08□□□□□ -0.64
CDH3-210ENST00000569117 PTPN1P18031 435 aaKnown RBP11.08□□□□□ -0.64
CDH3-210ENST00000569117 BRD2P25440 801 aaKnown RBP11.08□□□□□ -0.64
CDH3-210ENST00000569117 ANXA13P27216 316 aa11.08□□□□□ -0.64
CDH3-210ENST00000569117 NDUFV1P49821 464 aa11.08□□□□□ -0.64
CDH3-210ENST00000569117 KLHL30Q0D2K2 578 aa11.08□□□□□ -0.64
CDH3-210ENST00000569117 GPM6BQ13491 265 aa11.08□□□□□ -0.64
CDH3-210ENST00000569117 CAMK1Q14012 370 aa11.08□□□□□ -0.64
CDH3-210ENST00000569117 SMC1AQ14683 1233 aaKnown RBP11.08□□□□□ -0.64
CDH3-210ENST00000569117 CCDC142Q17RM4 750 aa11.08□□□□□ -0.64
CDH3-210ENST00000569117 TDRD12Q587J7 1177 aaKnown RBP11.08□□□□□ -0.64
CDH3-210ENST00000569117 MDH1BQ5I0G3 518 aa11.08□□□□□ -0.64
CDH3-210ENST00000569117 PDE12Q6L8Q7 609 aaKnown RBP11.08□□□□□ -0.64
CDH3-210ENST00000569117 FAM171BQ6P995 826 aa11.08□□□□□ -0.64
CDH3-210ENST00000569117 RSPO2Q6UXX9 243 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms