RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 PTPN1P18031 435 aaKnown RBP8.99□□□□□ -0.97
SF3B3-212ENST00000568539 RPL17P18621 184 aaKnown RBP8.99□□□□□ -0.97
SF3B3-212ENST00000568539 IRS1P35568 1242 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 PRKCIP41743 596 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 BPIFB4P59827 614 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 CREMQ03060 361 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 PTK2Q05397 1052 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 SMC1AQ14683 1233 aaKnown RBP8.99□□□□□ -0.97
SF3B3-212ENST00000568539 ASIC2Q16515 512 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 SFMBT2Q5VUG0 894 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 PDE12Q6L8Q7 609 aaKnown RBP8.99□□□□□ -0.97
SF3B3-212ENST00000568539 FAM171BQ6P995 826 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 LRRTM3Q86VH5 581 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 SLC47A2Q86VL8 602 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 C12orf29Q8N999 325 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 B3GALNT2Q8NCR0 500 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 OR8K1Q8NGG5 319 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 MYCBPAPQ8TBZ2 947 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 GDPD5Q8WTR4 605 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 TFAP2BQ92481 460 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 HEXIM2Q96MH2 286 aaKnown RBP8.99□□□□□ -0.97
SF3B3-212ENST00000568539 GUCD1Q96NT3 240 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 CLSTN3Q9BQT9 956 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 ZSWIM1Q9BR11 485 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 DNAI2Q9GZS0 605 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 LMAN2LQ9H0V9 348 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 NGRNQ9NPE2 291 aaKnown RBP8.99□□□□□ -0.97
SF3B3-212ENST00000568539 ENTPD7Q9NQZ7 604 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.99□□□□□ -0.97
SF3B3-212ENST00000568539 TMLHEQ9NVH6 421 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 FNIP2Q9P278 1114 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 NOCTQ9UK39 431 aaKnown RBP8.99□□□□□ -0.97
SF3B3-212ENST00000568539 GTF3C4Q9UKN8 822 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 KIAA1257Q9ULG3 409 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 PCDHGC5Q9Y5F6 944 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 CDY1Q9Y6F8 540 aa8.99□□□□□ -0.97
SF3B3-212ENST00000568539 CHD9Q3L8U1 2897 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 CITO14578 2027 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.98□□□□□ -0.97
SF3B3-212ENST00000568539 C2orf71A6NGG8 1288 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 HIDE1A8MVS5 230 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 O00370 1275 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 TEX28O15482 410 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 CSPG5O95196 566 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 CCDC172P0C7W6 258 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 VDRP11473 427 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 CD19P15391 556 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 BRD2P25440 801 aaKnown RBP8.98□□□□□ -0.97
SF3B3-212ENST00000568539 GNA15P30679 374 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 OR1D2P34982 312 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 NDUFV1P49821 464 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 TSPY1Q01534 308 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 ROR1Q01973 937 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 ARID5AQ03989 594 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 GPR17Q13304 367 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 RAB33AQ14088 237 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 BMS1Q14692 1282 aaKnown RBP8.98□□□□□ -0.97
SF3B3-212ENST00000568539 MEA1Q16626 185 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 SLC39A12Q504Y0 691 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 SGO2Q562F6 1265 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 MDH1BQ5I0G3 518 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 PLPP4Q5VZY2 271 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 HGSNATQ68CP4 663 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 ARHGAP17Q68EM7 881 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 WDR59Q6PJI9 974 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 NOP9Q86U38 636 aaKnown RBP8.98□□□□□ -0.97
SF3B3-212ENST00000568539 DCP1BQ8IZD4 617 aaKnown RBP8.98□□□□□ -0.97
SF3B3-212ENST00000568539 FUKQ8N0W3 1084 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 MICAL1Q8TDZ2 1067 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 EPS8L1Q8TE68 723 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 ZNF606Q8WXB4 792 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 DDX1Q92499 740 aaKnown RBP8.98□□□□□ -0.97
SF3B3-212ENST00000568539 CYFIP2Q96F07 1278 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 PCED1BQ96HM7 432 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 FAM161BQ96MY7 647 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 SYT11Q9BT88 431 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 B3GNT5Q9BYG0 378 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 TTYH1Q9H313 450 aaPredicted RBP8.98□□□□□ -0.97
SF3B3-212ENST00000568539 FAM49BQ9NUQ9 324 aa8.98□□□□□ -0.97
SF3B3-212ENST00000568539 TDRD15B5MCY1 1934 aaKnown RBP8.97□□□□□ -0.97
SF3B3-212ENST00000568539 WDR27A2RRH5 827 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 GOLGA6L6A8MZA4 724 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 THAP12O43422 761 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 MED7O43513 233 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 ABLIM3O94929 683 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 VNN2O95498 520 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 SERPING1P05155 500 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 SKILP12757 684 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 CCDC130P13994 396 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 CPB1P15086 417 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 CA8P35219 290 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 PDE6CP51160 858 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 ARPP19P56211 112 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 PRSS12P56730 875 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 GSDMDP57764 484 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 CDK17Q00537 523 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 CDR2Q01850 454 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 CYP27A1Q02318 531 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 KLHL30Q0D2K2 578 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 SMARCB1Q12824 385 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms