RNA–Protein interactions for RNA: ENST00000566550.1

HERPUD1-211, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 511 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-211ENST00000566550 DESI2Q9BSY9 194 aa3.7□□□□□ -1.82
HERPUD1-211ENST00000566550 SEZ6LQ9BYH1 1024 aa3.7□□□□□ -1.82
HERPUD1-211ENST00000566550 PITHD1Q9GZP4 211 aaPredicted RBP3.7□□□□□ -1.82
HERPUD1-211ENST00000566550 PDCL3Q9H2J4 239 aa3.7□□□□□ -1.82
HERPUD1-211ENST00000566550 CCDC177Q9NQR7 707 aaPredicted RBP3.7□□□□□ -1.82
HERPUD1-211ENST00000566550 PRDM8Q9NQV8 689 aa3.7□□□□□ -1.82
HERPUD1-211ENST00000566550 LANCL2Q9NS86 450 aa3.7□□□□□ -1.82
HERPUD1-211ENST00000566550 KCMF1Q9P0J7 381 aa3.7□□□□□ -1.82
HERPUD1-211ENST00000566550 RBPJLQ9UBG7 517 aa3.7□□□□□ -1.82
HERPUD1-211ENST00000566550 TNFRSF10DQ9UBN6 386 aa3.7□□□□□ -1.82
HERPUD1-211ENST00000566550 ZNF215Q9UL58 517 aaPredicted RBP3.7□□□□□ -1.82
HERPUD1-211ENST00000566550 ZMYND8Q9ULU4 1186 aaPredicted RBP3.7□□□□□ -1.82
HERPUD1-211ENST00000566550 HSF4Q9ULV5 492 aa3.7□□□□□ -1.82
HERPUD1-211ENST00000566550 MED16Q9Y2X0 877 aa3.7□□□□□ -1.82
HERPUD1-211ENST00000566550 KCTD3Q9Y597 815 aa3.7□□□□□ -1.82
HERPUD1-211ENST00000566550 PCDHGB5Q9Y5G0 923 aa3.7□□□□□ -1.82
HERPUD1-211ENST00000566550 SOS1Q07889 1333 aaPredicted RBP3.7□□□□□ -1.82
HERPUD1-211ENST00000566550 ERCC6Q03468 1493 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 TEX51A0A1B0GUA7 166 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 A0A1W2PQ45 241 aaPredicted RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 A0A1W2PQY0 241 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 GTPBP10A4D1E9 387 aaKnown RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 E7EVH7 732 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 H0Y858 1186 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 STX16-NPEPL1H3BU86 382 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 STX16O14662 325 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 PPP6R2O75170 966 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 SEC24DO94855 1032 aaPredicted RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 TGDSO95455 350 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 MATN4O95460 622 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 SGPL1O95470 568 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 ANXA1P04083 346 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 CHGBP05060 677 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 PRKCBP05771 671 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 HNRNPCP07910 306 aaKnown RBP eCLIP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 GNAI3P08754 354 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 FTH1P19P0C7X4 201 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 SRGAP2BP0DMP2 458 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 PRKCAP17252 672 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 EGR1P18146 543 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 FPR1P21462 350 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 YY1P25490 414 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 APEX1P27695 318 aaKnown RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 MLH1P40692 756 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 DPP6P42658 865 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 PAFAH1B1P43034 410 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 HARS2P49590 506 aaKnown RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 CTCFP49711 727 aaPredicted RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 CCT4P50991 539 aaKnown RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 COPAP53621 1224 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 POLE2P56282 527 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 NLRP5P59047 1200 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 PSMC1P62191 440 aaKnown RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 GNAI1P63096 354 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 IFI35P80217 286 aaPredicted RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 CREB5Q02930 508 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 PPARDQ03181 441 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 CD69Q07108 199 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 PDCLQ13371 301 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 EIF4A2Q14240 407 aaKnown RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 ANKRD1Q15327 319 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 MAPKAPK3Q16644 382 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 TBC1D10BQ4KMP7 808 aaPredicted RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 CCDC178Q5BJE1 867 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 DNAJC21Q5F1R6 531 aaKnown RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 FAM69AQ5T7M9 428 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 SHQ1Q6PI26 577 aaKnown RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 MFSD6Q6ZSS7 791 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 TMTC3Q6ZXV5 915 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 SZRD1Q7Z422 152 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 ZNF605Q86T29 641 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 ARMC8Q8IUR7 673 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 CCDC28AQ8IWP9 274 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 SP8Q8IXZ3 490 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 CEP57L1Q8IYX8 460 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 TAGAPQ8N103 731 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 VGLL2Q8N8G2 317 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 REPS2Q8NFH8 660 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 OR6Y1Q8NGX8 325 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 ZNF480Q8WV37 535 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 CUL5Q93034 780 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 SH3KBP1Q96B97 665 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 GPATCH1Q9BRR8 931 aaKnown RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 MCOLN1Q9GZU1 580 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 MS4A7Q9GZW8 240 aaPredicted RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 SLC25A18Q9H1K4 315 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 ABHD16BQ9H3Z7 469 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 RNPEPQ9H4A4 650 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 SYNCQ9H7C4 482 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 NOD2Q9HC29 1040 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 A1CFQ9NQ94 594 aaKnown RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 TLR9Q9NR96 1032 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 DIAPH3Q9NSV4 1193 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 TMEM140Q9NV12 185 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 SEPT11Q9NVA2 429 aaKnown RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 POLR3BQ9NW08 1133 aaPredicted RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 TMOD4Q9NZQ9 345 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 CHORDC1Q9UHD1 332 aaPredicted RBP3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 KCND3Q9UK17 655 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 TMEM5Q9Y2B1 443 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms