RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ADCY6O43306 1168 aa13.94□□□□□ -0.18
VPS4A-204ENST00000566354 ASMTLO95671 621 aa13.94□□□□□ -0.18
VPS4A-204ENST00000566354 PAX7P23759 505 aa13.94□□□□□ -0.18
VPS4A-204ENST00000566354 NAA25Q14CX7 972 aa13.94□□□□□ -0.18
VPS4A-204ENST00000566354 TMED2Q15363 201 aa13.94□□□□□ -0.18
VPS4A-204ENST00000566354 ZRSR2Q15696 482 aaKnown RBP13.94□□□□□ -0.18
VPS4A-204ENST00000566354 P3H1Q32P28 736 aa13.94□□□□□ -0.18
VPS4A-204ENST00000566354 TRABD2AQ86V40 505 aa13.94□□□□□ -0.18
VPS4A-204ENST00000566354 PRCCQ92733 491 aaPredicted RBP13.94□□□□□ -0.18
VPS4A-204ENST00000566354 SEPT9Q9UHD8 586 aaPredicted RBP13.94□□□□□ -0.18
VPS4A-204ENST00000566354 PRPF4O43172 522 aaKnown RBP eCLIP13.93□□□□□ -0.18
VPS4A-204ENST00000566354 WFS1O76024 890 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 RGS2P41220 211 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 TAS2R40P59535 323 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 CLDN10P78369 228 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 ARHGAP1Q07960 439 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 ADCY1Q08828 1119 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 MAMLD1Q13495 774 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 PPP1R2P3Q6NXS1 205 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 RGS9BPQ6ZS82 235 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 SOCS4Q8WXH5 440 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 BSNDQ8WZ55 320 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 FAM213AQ9BRX8 229 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 ETNK1Q9HBU6 452 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 KIAA1586Q9HCI6 787 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 ADAM22Q9P0K1 906 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 SENP1Q9P0U3 644 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 GABRQQ9UN88 632 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 TRIM33Q9UPN9 1127 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 SCINQ9Y6U3 715 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 ARID2Q68CP9 1835 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 SMPD1P17405 629 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 STAT5BP51692 787 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 POLGP54098 1239 aaPredicted RBP13.93□□□□□ -0.18
VPS4A-204ENST00000566354 YARSP54577 528 aaKnown RBP13.93□□□□□ -0.18
VPS4A-204ENST00000566354 FCGRTP55899 365 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 SPARCL1Q14515 664 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 PARP6Q2NL67 630 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 C2CD6Q53TS8 623 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 DAB2IPQ5VWQ8 1189 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 PLEKHA7Q6IQ23 1121 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 LLGL2Q6P1M3 1020 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 DRICH1Q6PGQ1 229 aaPredicted RBP13.93□□□□□ -0.18
VPS4A-204ENST00000566354 DENND1AQ8TEH3 1009 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 ZNF516Q92618 1163 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 CEP170P1Q96L14 293 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 APBA2Q99767 749 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 FAM118BQ9BPY3 351 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 SMG5Q9UPR3 1016 aaKnown RBP13.93□□□□□ -0.18
VPS4A-204ENST00000566354 USH1CQ9Y6N9 552 aa13.93□□□□□ -0.18
VPS4A-204ENST00000566354 A8MUI8 341 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 DKC1O60832 514 aaKnown RBP eCLIP13.92□□□□□ -0.18
VPS4A-204ENST00000566354 DIAPH2O60879 1101 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 ATP2A2P16615 1042 aaKnown RBP13.92□□□□□ -0.18
VPS4A-204ENST00000566354 CCNG1P51959 295 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 NFX1Q12986 1120 aaKnown RBP13.92□□□□□ -0.18
VPS4A-204ENST00000566354 ZACNQ401N2 412 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 FAM47EQ6ZV65 393 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 PHF13Q86YI8 300 aaPredicted RBP13.92□□□□□ -0.18
VPS4A-204ENST00000566354 REM2Q8IYK8 340 aaPredicted RBP13.92□□□□□ -0.18
VPS4A-204ENST00000566354 RCOR2Q8IZ40 523 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 ANKLE1Q8NAG6 615 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 C11orf70Q9BRQ4 267 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 PPCSQ9HAB8 311 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 SAYSD1Q9NPB0 183 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 RNF186Q9NXI6 227 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 PHTF1Q9UMS5 762 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 BRCA2P51587 3418 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 DNALI1O14645 258 aaPredicted RBP13.92□□□□□ -0.18
VPS4A-204ENST00000566354 TLR3O15455 904 aaKnown RBP13.92□□□□□ -0.18
VPS4A-204ENST00000566354 EXTL3O43909 919 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 OATP04181 439 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 CD58P19256 250 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 MARK3P27448 753 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 GCAP28676 217 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 ALDH3A1P30838 453 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 ABCD1P33897 745 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 RTP1P59025 263 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 NOMO3P69849 1222 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 MTERF2Q49AM1 385 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 XKR3Q5GH77 459 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 VSIG1Q86XK7 387 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 BICD1Q96G01 975 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 LRRC37BQ96QE4 947 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 FNBP1Q96RU3 617 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 LRMDAQ9H2I8 198 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 TRABDQ9H4I3 376 aa13.92□□□□□ -0.18
VPS4A-204ENST00000566354 H0YCG3 227 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 LIASO43766 372 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 DCTN3O75935 186 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 TJP3O95049 919 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 HLA-DRAP01903 254 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 TNNI1P19237 187 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 ACO1P21399 889 aaKnown RBP13.91□□□□□ -0.18
VPS4A-204ENST00000566354 SOX10P56693 466 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 SP3Q02447 781 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 C1QBPQ07021 282 aaKnown RBP13.91□□□□□ -0.18
VPS4A-204ENST00000566354 GRIK3Q13003 919 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 PSMD6Q15008 389 aa13.91□□□□□ -0.18
VPS4A-204ENST00000566354 DUSP28Q4G0W2 176 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms