RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 NENFQ9UMX5 172 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 BACE2Q9Y5Z0 518 aa13.58□□□□□ -0.24
CLK3-214ENST00000564096 MKI67P46013 3256 aaKnown RBP13.57□□□□□ -0.24
CLK3-214ENST00000564096 PTPRSQ13332 1948 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 LINC01553A4QN01 128 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 ANKRD62A6NC57 917 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 TMCO5BA8MYB1 307 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 H0YGN5 161 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 HCRTO43612 131 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 CALCAP01258 141 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 TMEM253P0C7T8 217 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 UNGP13051 313 aaPredicted RBP13.57□□□□□ -0.24
CLK3-214ENST00000564096 NPR3P17342 541 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 DSG1Q02413 1049 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 PDCLQ13371 301 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 ACAD10Q6JQN1 1059 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 DENND1BQ6P3S1 775 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 PALB2Q86YC2 1186 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 PHF13Q86YI8 300 aaPredicted RBP13.57□□□□□ -0.24
CLK3-214ENST00000564096 C12orf29Q8N999 325 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 ANKRD52Q8NB46 1076 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 OLIG1Q8TAK6 271 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 C2orf15Q8WU43 125 aaKnown RBP13.57□□□□□ -0.24
CLK3-214ENST00000564096 SECISBP2LQ93073 1101 aaKnown RBP13.57□□□□□ -0.24
CLK3-214ENST00000564096 ZNF653Q96CK0 615 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 PCED1BQ96HM7 432 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 FUBP3Q96I24 572 aaKnown RBP eCLIP13.57□□□□□ -0.24
CLK3-214ENST00000564096 PCDHB18PQ96TA0 734 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 RTP3Q9BQQ7 232 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 ZSWIM1Q9BR11 485 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 ZCWPW1Q9H0M4 648 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 CRTAC1Q9NQ79 661 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 MTRRQ9UBK8 725 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 MSRAQ9UJ68 235 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 LZTS1Q9Y250 596 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 REXO2Q9Y3B8 237 aaKnown RBP13.57□□□□□ -0.24
CLK3-214ENST00000564096 NME7Q9Y5B8 376 aa13.57□□□□□ -0.24
CLK3-214ENST00000564096 LCHNA4D1U4 455 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 ESPNB1AK53 854 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 ZNF263O14978 683 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 EFEMP2O95967 443 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 FTLP02792 175 aaPredicted RBP13.56□□□□□ -0.24
CLK3-214ENST00000564096 RB1P06400 928 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 ABCB4P21439 1286 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 BMPR1AP36894 532 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 RABGGTBP53611 331 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 UBE3AQ05086 875 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 MRPL58Q14197 206 aaKnown RBP13.56□□□□□ -0.24
CLK3-214ENST00000564096 IFI16Q16666 785 aaKnown RBP13.56□□□□□ -0.24
CLK3-214ENST00000564096 SLC39A12Q504Y0 691 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 FAM171BQ6P995 826 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 ZNF662Q6ZS27 426 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 FUKQ8N0W3 1084 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 VPS52Q8N1B4 723 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 VCPIP1Q96JH7 1222 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 PPP1R13BQ96KQ4 1090 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 CALR3Q96L12 384 aaKnown RBP13.56□□□□□ -0.24
CLK3-214ENST00000564096 ALS2CR12Q96Q35 445 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 TGS1Q96RS0 853 aaKnown RBP13.56□□□□□ -0.24
CLK3-214ENST00000564096 C11orf70Q9BRQ4 267 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 ISCUQ9H1K1 167 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 ABCB6Q9NP58 842 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 CYLDQ9NQC7 956 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 MRPL17Q9NRX2 175 aaKnown RBP13.56□□□□□ -0.24
CLK3-214ENST00000564096 CHST7Q9NS84 486 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 TRMT1Q9NXH9 659 aaKnown RBP13.56□□□□□ -0.24
CLK3-214ENST00000564096 ADAM22Q9P0K1 906 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 GTF3C4Q9UKN8 822 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 SCINQ9Y6U3 715 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 NCANO14594 1321 aa13.56□□□□□ -0.24
CLK3-214ENST00000564096 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.55□□□□□ -0.24
CLK3-214ENST00000564096 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.55□□□□□ -0.24
CLK3-214ENST00000564096 MYBPHLA2RUH7 354 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 BTNL10A8MVZ5 291 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 C5orf67F2Z3F1 127 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 XPO1O14980 1071 aaKnown RBP13.55□□□□□ -0.24
CLK3-214ENST00000564096 PJA2O43164 708 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 LPXNO60711 386 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 ATP2C2O75185 946 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 AP1G2O75843 785 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 CA3P07451 260 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 LINC00271P0C7V0 271 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 MMP8P22894 467 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 SSTR3P32745 418 aaPredicted RBP13.55□□□□□ -0.24
CLK3-214ENST00000564096 BMP8BP34820 402 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 CA8P35219 290 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 ACADSBP45954 432 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 GALCP54803 685 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 CFAP221Q4G0U5 840 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 KIAA0319Q5VV43 1072 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 MMS22LQ6ZRQ5 1243 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 MON1BQ7L1V2 547 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 TTC30AQ86WT1 665 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 ERICH1Q86X53 443 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 RHOT2Q8IXI1 618 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 TDHQ8IZJ6 230 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 KLHL23Q8NBE8 558 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 SPPL2BQ8TCT7 592 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 STK32AQ8WU08 396 aa13.55□□□□□ -0.24
CLK3-214ENST00000564096 CPA5Q8WXQ8 436 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms