RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CCDC6Q16204 474 aa18.11■□□□□ 0.49
CLN3-211ENST00000564091 LMBRD2Q68DH5 695 aaPredicted RBP18.11■□□□□ 0.49
CLN3-211ENST00000564091 TMEM86AQ8N2M4 240 aa18.11■□□□□ 0.49
CLN3-211ENST00000564091 LRRC52Q8N7C0 313 aa18.11■□□□□ 0.49
CLN3-211ENST00000564091 LEO1Q8WVC0 666 aaPredicted RBP18.11■□□□□ 0.49
CLN3-211ENST00000564091 SLC22A12Q96S37 553 aa18.11■□□□□ 0.49
CLN3-211ENST00000564091 CYP2S1Q96SQ9 504 aa18.11■□□□□ 0.49
CLN3-211ENST00000564091 MTMR12Q9C0I1 747 aa18.11■□□□□ 0.49
CLN3-211ENST00000564091 KIF9Q9HAQ2 790 aa18.11■□□□□ 0.49
CLN3-211ENST00000564091 OLFML3Q9NRN5 406 aa18.11■□□□□ 0.49
CLN3-211ENST00000564091 PANK4Q9NVE7 773 aa18.11■□□□□ 0.49
CLN3-211ENST00000564091 SIX4Q9UIU6 781 aa18.11■□□□□ 0.49
CLN3-211ENST00000564091 ITGA11Q9UKX5 1188 aa18.11■□□□□ 0.49
CLN3-211ENST00000564091 SLC8A2Q9UPR5 921 aa18.11■□□□□ 0.49
CLN3-211ENST00000564091 RNF40O75150 1001 aa18.1■□□□□ 0.49
CLN3-211ENST00000564091 PDCP20941 246 aa18.1■□□□□ 0.49
CLN3-211ENST00000564091 SYT1P21579 422 aa18.1■□□□□ 0.49
CLN3-211ENST00000564091 STAT6P42226 847 aa18.1■□□□□ 0.49
CLN3-211ENST00000564091 ZNF268Q14587 947 aaPredicted RBP18.1■□□□□ 0.49
CLN3-211ENST00000564091 MTF1Q14872 753 aa18.1■□□□□ 0.49
CLN3-211ENST00000564091 PPM1JQ5JR12 505 aa18.1■□□□□ 0.49
CLN3-211ENST00000564091 CCDC73Q6ZRK6 1079 aa18.1■□□□□ 0.49
CLN3-211ENST00000564091 SCN4BQ8IWT1 228 aa18.1■□□□□ 0.49
CLN3-211ENST00000564091 ADGRF2Q8IZF7 708 aa18.1■□□□□ 0.49
CLN3-211ENST00000564091 ARRDC1-AS1Q9H2J1 176 aa18.1■□□□□ 0.49
CLN3-211ENST00000564091 ABCB6Q9NP58 842 aa18.1■□□□□ 0.49
CLN3-211ENST00000564091 GDAP2Q9NXN4 497 aa18.1■□□□□ 0.49
CLN3-211ENST00000564091 SDK1Q7Z5N4 2213 aa18.1■□□□□ 0.49
CLN3-211ENST00000564091 FRMD3A2A2Y4 597 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 SOBPA7XYQ1 873 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 GABRDO14764 452 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 ATG13O75143 517 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 ATP2C2O75185 946 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 RPP40O75818 363 aaKnown RBP18.09■□□□□ 0.49
CLN3-211ENST00000564091 TMEM191BP0C7N4 346 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 GJA4P35212 333 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 AMPD2Q01433 879 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 PDGFRLQ15198 375 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 SOWAHAQ2M3V2 549 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 KBTBD6Q86V97 674 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 SPATA2LQ8IUW3 424 aaPredicted RBP18.09■□□□□ 0.49
CLN3-211ENST00000564091 TOP6BLQ8N6T0 577 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 GLIS3Q8NEA6 775 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 OR5B17Q8NGF7 314 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 GAB3Q8WWW8 586 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 MYRFLQ96LU7 910 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 USP28Q96RU2 1077 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 P2RY13Q9BPV8 354 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 ECT2Q9H8V3 914 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 DUS2Q9NX74 493 aaKnown RBP18.09■□□□□ 0.49
CLN3-211ENST00000564091 UXTQ9UBK9 157 aaPredicted RBP18.09■□□□□ 0.49
CLN3-211ENST00000564091 WNT6Q9Y6F9 365 aa18.09■□□□□ 0.49
CLN3-211ENST00000564091 SCN1AP35498 2009 aa18.08■□□□□ 0.49
CLN3-211ENST00000564091 MYH11P35749 1972 aa18.08■□□□□ 0.49
CLN3-211ENST00000564091 PTPRJQ12913 1337 aa18.08■□□□□ 0.49
CLN3-211ENST00000564091 CKMP06732 381 aa18.08■□□□□ 0.48
CLN3-211ENST00000564091 ADRB1P08588 477 aa18.08■□□□□ 0.48
CLN3-211ENST00000564091 LMO2P25791 158 aa18.08■□□□□ 0.48
CLN3-211ENST00000564091 LHX1P48742 406 aa18.08■□□□□ 0.48
CLN3-211ENST00000564091 FAM160A1Q05DH4 1040 aa18.08■□□□□ 0.48
CLN3-211ENST00000564091 ALCAMQ13740 583 aa18.08■□□□□ 0.48
CLN3-211ENST00000564091 SF3A2Q15428 464 aaKnown RBP18.08■□□□□ 0.48
CLN3-211ENST00000564091 ZNF77Q15935 545 aa18.08■□□□□ 0.48
CLN3-211ENST00000564091 CFAP221Q4G0U5 840 aa18.08■□□□□ 0.48
CLN3-211ENST00000564091 CACNA2D4Q7Z3S7 1137 aa18.08■□□□□ 0.48
CLN3-211ENST00000564091 GPD1LQ8N335 351 aa18.08■□□□□ 0.48
CLN3-211ENST00000564091 PDILTQ8N807 584 aa18.08■□□□□ 0.48
CLN3-211ENST00000564091 ARL14EPQ8N8R7 260 aaPredicted RBP18.08■□□□□ 0.48
CLN3-211ENST00000564091 HPS3Q969F9 1004 aa18.08■□□□□ 0.48
CLN3-211ENST00000564091 TRMT2BQ96GJ1 504 aaKnown RBP18.08■□□□□ 0.48
CLN3-211ENST00000564091 HHIPQ96QV1 700 aa18.08■□□□□ 0.48
CLN3-211ENST00000564091 TMEM206Q9H813 350 aa18.08■□□□□ 0.48
CLN3-211ENST00000564091 CACNA1BQ00975 2339 aa18.07■□□□□ 0.48
CLN3-211ENST00000564091 TRAV19A0A0A6YYK7 116 aa18.07■□□□□ 0.48
CLN3-211ENST00000564091 C2orf78A6NCI8 922 aa18.07■□□□□ 0.48
CLN3-211ENST00000564091 CCDC192P0DO97 292 aa18.07■□□□□ 0.48
CLN3-211ENST00000564091 DRD1P21728 446 aa18.07■□□□□ 0.48
CLN3-211ENST00000564091 KCNA4P22459 653 aa18.07■□□□□ 0.48
CLN3-211ENST00000564091 PCSK1P29120 753 aa18.07■□□□□ 0.48
CLN3-211ENST00000564091 PSMC1P62191 440 aaKnown RBP18.07■□□□□ 0.48
CLN3-211ENST00000564091 SLC39A14Q15043 492 aa18.07■□□□□ 0.48
CLN3-211ENST00000564091 FAM171BQ6P995 826 aa18.07■□□□□ 0.48
CLN3-211ENST00000564091 CBWD2Q8IUF1 395 aa18.07■□□□□ 0.48
CLN3-211ENST00000564091 CPA6Q8N4T0 437 aa18.07■□□□□ 0.48
CLN3-211ENST00000564091 OSCP1Q8WVF1 389 aa18.07■□□□□ 0.48
CLN3-211ENST00000564091 EZH1Q92800 747 aaPredicted RBP18.07■□□□□ 0.48
CLN3-211ENST00000564091 HPDLQ96IR7 371 aa18.07■□□□□ 0.48
CLN3-211ENST00000564091 ANKRD36BP1Q96IX9 119 aa18.07■□□□□ 0.48
CLN3-211ENST00000564091 RXFP3Q9NSD7 469 aa18.07■□□□□ 0.48
CLN3-211ENST00000564091 INTS13Q9NVM9 706 aa18.07■□□□□ 0.48
CLN3-211ENST00000564091 GCNT4Q9P109 453 aa18.07■□□□□ 0.48
CLN3-211ENST00000564091 R3HCC1Q9Y3T6 440 aaKnown RBP18.07■□□□□ 0.48
CLN3-211ENST00000564091 ZFHX4Q86UP3 3567 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 CCDC163A0A0D9SF12 145 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 PDGFRBP09619 1106 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 USP17L7P0C7H9 530 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 RAP1GAPP47736 663 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 IFNAR2P48551 515 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 MYO1EQ12965 1108 aa18.06■□□□□ 0.48
CLN3-211ENST00000564091 AASDHQ4L235 1098 aaPredicted RBP18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms