RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TTF1Q15361 905 aaPredicted RBP5.59□□□□□ -1.51
VPS35-205ENST00000563984 FAM214AQ32MH5 1076 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 RABL3Q5HYI8 236 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 RNF219Q5W0B1 726 aaPredicted RBP5.59□□□□□ -1.51
VPS35-205ENST00000563984 GALNT17Q6IS24 598 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 MZT2AQ6P582 158 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 TUBA1AQ71U36 451 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 LURAP1LQ8IV03 231 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 LRRC43Q8N309 656 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 PDCL2Q8N4E4 241 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 ZNF483Q8TF39 744 aaPredicted RBP5.59□□□□□ -1.51
VPS35-205ENST00000563984 FBXO41Q8TF61 875 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 HVCN1Q96D96 273 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 C1orf74Q96LT6 269 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 CENPOQ9BU64 300 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 IKZF4Q9H2S9 585 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 OGFRQ9NZT2 677 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 DPP7Q9UHL4 492 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 EDARQ9UNE0 448 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 CLCA2Q9UQC9 943 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 SPAG9O60271 1321 aaKnown RBP5.58□□□□□ -1.52
VPS35-205ENST00000563984 SYNJ2BP-COX16A0A087WUM0 186 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 UQCRHLA0A096LP55 91 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 HNRNPCL2B2RXH8 293 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 K7ENM7 598 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 EIF3FO00303 357 aaPredicted RBP5.58□□□□□ -1.52
VPS35-205ENST00000563984 GPR39O43194 453 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 KLHL41O60662 606 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 HNRNPCL1O60812 293 aaKnown RBP5.58□□□□□ -1.52
VPS35-205ENST00000563984 TMCC2O75069 709 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 INMTO95050 263 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 SCGB1D2O95969 90 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 CFBP00751 764 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 UQCRHP07919 91 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 TPM1P09493 284 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 TMOD1P28289 359 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 STT3AP46977 705 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 TMPRSS15P98073 1019 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 IQCB1Q15051 598 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 ANKRD1Q15327 319 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 INAQ16352 499 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 PKN2Q16513 984 aaKnown RBP5.58□□□□□ -1.52
VPS35-205ENST00000563984 ANO4Q32M45 955 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 MEX3CQ5U5Q3 659 aaKnown RBP5.58□□□□□ -1.52
VPS35-205ENST00000563984 FNDC7Q5VTL7 733 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 FAM180AQ6UWF9 173 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 TMCO3Q6UWJ1 677 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 ABHD15Q6UXT9 468 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 PDZD4Q76G19 769 aaPredicted RBP5.58□□□□□ -1.52
VPS35-205ENST00000563984 RSRC2Q7L4I2 434 aaKnown RBP5.58□□□□□ -1.52
VPS35-205ENST00000563984 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.58□□□□□ -1.52
VPS35-205ENST00000563984 SLC44A2Q8IWA5 706 aaPredicted RBP5.58□□□□□ -1.52
VPS35-205ENST00000563984 SLC7A5P1Q8MH63 180 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 AMER2Q8N7J2 671 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 OR52N2Q8NGI0 321 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 JPH3Q8WXH2 748 aaPredicted RBP5.58□□□□□ -1.52
VPS35-205ENST00000563984 AUTS2Q8WXX7 1259 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 THOC1Q96FV9 657 aaKnown RBP5.58□□□□□ -1.52
VPS35-205ENST00000563984 C8orf76Q96K31 380 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 LSM14BQ9BX40 385 aaKnown RBP5.58□□□□□ -1.52
VPS35-205ENST00000563984 MMRN2Q9H8L6 949 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 SEPT11Q9NVA2 429 aaKnown RBP5.58□□□□□ -1.52
VPS35-205ENST00000563984 STK39Q9UEW8 545 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 HERC5Q9UII4 1024 aaKnown RBP5.58□□□□□ -1.52
VPS35-205ENST00000563984 WDR37Q9Y2I8 494 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 AFG3L2Q9Y4W6 797 aa5.58□□□□□ -1.52
VPS35-205ENST00000563984 P4HA2O15460 535 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 CEP104O60308 925 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 RECQL4O94761 1208 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 RPSAP08865 295 aaKnown RBP5.57□□□□□ -1.52
VPS35-205ENST00000563984 HK1P19367 917 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 CRHR1P34998 444 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 SKIV2L2P42285 1042 aaKnown RBP5.57□□□□□ -1.52
VPS35-205ENST00000563984 PDE6CP51160 858 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 PSMD7P51665 324 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 RCAN1P53805 252 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 POLR2FP61218 127 aaKnown RBP5.57□□□□□ -1.52
VPS35-205ENST00000563984 TMF1P82094 1093 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 COG2Q14746 738 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 NBPF8Q3BBV2 869 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 DACT2Q5SW24 774 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 KAZNQ674X7 775 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 NXNQ6DKJ4 435 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 PLBD1Q6P4A8 553 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 SASS6Q6UVJ0 657 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 BTNL9Q6UXG8 535 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 DSTYKQ6XUX3 929 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 PNMA8AQ86V59 439 aaPredicted RBP5.57□□□□□ -1.52
VPS35-205ENST00000563984 CMIPQ8IY22 773 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 LILRB1Q8NHL6 650 aaPredicted RBP5.57□□□□□ -1.52
VPS35-205ENST00000563984 TTC8Q8TAM2 541 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 NUP133Q8WUM0 1156 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 FATE1Q969F0 183 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 AHCYL2Q96HN2 611 aaKnown RBP5.57□□□□□ -1.52
VPS35-205ENST00000563984 CCDC114Q96M63 670 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 OSBPL10Q9BXB5 764 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 TMEM165Q9HC07 324 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 VTA1Q9NP79 307 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 PAPOLBQ9NRJ5 636 aaKnown RBP5.57□□□□□ -1.52
VPS35-205ENST00000563984 GPRC5DQ9NZD1 345 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms