RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 IPPQ9Y573 584 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 VCANP13611 3396 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 COL4A4P53420 1690 aaPredicted RBP9.48□□□□□ -0.89
VPS39-207ENST00000563692 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.47□□□□□ -0.89
VPS39-207ENST00000563692 SMIM28A0A1B0GU29 152 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 CARNS1A5YM72 827 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 MIF4GDA9UHW6 222 aaKnown RBP9.47□□□□□ -0.89
VPS39-207ENST00000563692 H3BQ06 376 aaPredicted RBP9.47□□□□□ -0.89
VPS39-207ENST00000563692 MEFVO15553 781 aaPredicted RBP9.47□□□□□ -0.89
VPS39-207ENST00000563692 FGF18O76093 207 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 KIF4AO95239 1232 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 ITGB1P05556 798 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 CALB1P05937 261 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 FAM163BP0C2L3 166 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 VDRP11473 427 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 CD19P15391 556 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 MCM3P25205 808 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 CENPCQ03188 943 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 ITIH3Q06033 890 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 C1QBPQ07021 282 aaKnown RBP9.47□□□□□ -0.89
VPS39-207ENST00000563692 STILQ15468 1287 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 ZNF394Q53GI3 561 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 TEX35Q5T0J7 233 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 NAA35Q5VZE5 725 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 PTCRAQ6ISU1 281 aaPredicted RBP9.47□□□□□ -0.89
VPS39-207ENST00000563692 PDE12Q6L8Q7 609 aaKnown RBP9.47□□□□□ -0.89
VPS39-207ENST00000563692 C11orf63Q6NUN7 778 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 GLB1LQ6UWU2 654 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 SCARA5Q6ZMJ2 495 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 NT5DC3Q86UY8 548 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 DNAAF5Q86Y56 855 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 PHF13Q86YI8 300 aaPredicted RBP9.47□□□□□ -0.89
VPS39-207ENST00000563692 CREG2Q8IUH2 290 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 COLGALT1Q8NBJ5 622 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 CXorf38Q8TB03 319 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 SPPL3Q8TCT6 385 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 CPA5Q8WXQ8 436 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 PGBD4Q96DM1 585 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 ARHGEF26Q96DR7 871 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 TMEM176AQ96HP8 235 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 ZNF560Q96MR9 790 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 ZNF558Q96NG5 402 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 NUP85Q9BW27 656 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 LHX5Q9H2C1 402 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 NXF3Q9H4D5 531 aaKnown RBP9.47□□□□□ -0.89
VPS39-207ENST00000563692 IGFLR1Q9H665 355 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 ABCB6Q9NP58 842 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 OSGEPQ9NPF4 335 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 SLC38A7Q9NVC3 462 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 PARVAQ9NVD7 372 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 ADAM22Q9P0K1 906 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.47□□□□□ -0.89
VPS39-207ENST00000563692 BARX2Q9UMQ3 279 aaPredicted RBP9.47□□□□□ -0.89
VPS39-207ENST00000563692 PCDHGC3Q9UN70 934 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 POLIQ9UNA4 740 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 GIT1Q9Y2X7 761 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 HES2Q9Y543 173 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 ALG6Q9Y672 507 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 SCINQ9Y6U3 715 aa9.47□□□□□ -0.89
VPS39-207ENST00000563692 V9GYY5 206 aaPredicted RBP9.47□□□□□ -0.89
VPS39-207ENST00000563692 NCOR1O75376 2440 aa9.46□□□□□ -0.89
VPS39-207ENST00000563692 MYO1FO00160 1098 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 PIRO00625 290 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 KCNK3O14649 394 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 ZNF185O15231 689 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 BUB1BO60566 1050 aaPredicted RBP9.46□□□□□ -0.9
VPS39-207ENST00000563692 CILPO75339 1184 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 SRGAP2BP0DMP2 458 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 SSTR3P32745 418 aaPredicted RBP9.46□□□□□ -0.9
VPS39-207ENST00000563692 SLC1A1P43005 524 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 ALDH7A1P49419 539 aaKnown RBP9.46□□□□□ -0.9
VPS39-207ENST00000563692 NDUFV1P49821 464 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 CDH8P55286 799 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 SNX16P57768 344 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 RNASELQ05823 741 aaKnown RBP9.46□□□□□ -0.9
VPS39-207ENST00000563692 MESDQ14696 234 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 CNGA2Q16280 664 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 SV2CQ496J9 727 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 C9orf57Q5W0N0 161 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 DPH6Q7L8W6 267 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 UNC93AQ86WB7 457 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 ERICH1Q86X53 443 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 SMG8Q8ND04 991 aaKnown RBP9.46□□□□□ -0.9
VPS39-207ENST00000563692 ZNF564Q8TBZ8 553 aaPredicted RBP9.46□□□□□ -0.9
VPS39-207ENST00000563692 URGCPQ8TCY9 931 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 ANKRD7Q92527 254 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 HES6Q96HZ4 224 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 HEXIM2Q96MH2 286 aaKnown RBP9.46□□□□□ -0.9
VPS39-207ENST00000563692 ZMAT2Q96NC0 199 aaKnown RBP9.46□□□□□ -0.9
VPS39-207ENST00000563692 CASD1Q96PB1 797 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 NAP1L3Q99457 506 aaPredicted RBP9.46□□□□□ -0.9
VPS39-207ENST00000563692 TRAIPQ9BWF2 469 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 NT5C1AQ9BXI3 368 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 MIS12Q9H081 205 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 TLE6Q9H808 572 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 ENTPD7Q9NQZ7 604 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 TLR9Q9NR96 1032 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 FAM105AQ9NUU6 356 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 SPG21Q9NZD8 308 aa9.46□□□□□ -0.9
VPS39-207ENST00000563692 KLK14Q9P0G3 267 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms