RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 ZNF667Q5HYK9 610 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 MDH1BQ5I0G3 518 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 C4orf50Q6ZRC1 276 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 MYLPFQ96A32 169 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 RSPRY1Q96DX4 576 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 MKNK1Q9BUB5 465 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 TASP1Q9H6P5 420 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 TRPV4Q9HBA0 871 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 HEBP1Q9NRV9 189 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 FAM86C1Q9NVL1 165 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 RMND1Q9NWS8 449 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 SIT1Q9Y3P8 196 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 PATJQ8NI35 1801 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 SLC38A8A6NNN8 435 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 A8MXQ7 604 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 DPYSL4O14531 572 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 AKAP3O75969 853 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 F11P03951 625 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 BDNFP23560 247 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 RPL13P26373 211 aaKnown RBP16.73■□□□□ 0.27
VPS39-203ENST00000561797 RAP1GAPP47736 663 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 CDH8P55286 799 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 NLRP12P59046 1061 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 PRKCQQ04759 706 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 MAPRE1Q15691 268 aaKnown RBP16.73■□□□□ 0.27
VPS39-203ENST00000561797 NFIL3Q16649 462 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 C1orf220Q5T0J3 134 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 SCARA5Q6ZMJ2 495 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 TPRG1Q6ZUI0 275 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 MFSD6LQ8IWD5 586 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 YAF2Q8IY57 180 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 FAM186BQ8IYM0 893 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 DTWD2Q8NBA8 298 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 DEPDC1BQ8WUY9 529 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 ATOH1Q92858 354 aaPredicted RBP16.73■□□□□ 0.27
VPS39-203ENST00000561797 SMARCE1Q969G3 411 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 E2F7Q96AV8 911 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 FUBP3Q96I24 572 aaKnown RBP eCLIP16.73■□□□□ 0.27
VPS39-203ENST00000561797 PHOX2BQ99453 314 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 DPEP3Q9H4B8 488 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 SMYD3Q9H7B4 428 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 MMRN2Q9H8L6 949 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 PCDHA5Q9Y5H7 936 aa16.73■□□□□ 0.27
VPS39-203ENST00000561797 KANSL1LA0AUZ9 987 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 ZNF263O14978 683 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 MAPK13O15264 365 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 LRRN2O75325 713 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 SMC2O95347 1197 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 FAM163BP0C2L3 166 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 TRIM49P0CI25 452 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 TRIM49CP0CI26 452 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 KRT13P13646 458 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 PTPN1P18031 435 aaKnown RBP16.72■□□□□ 0.27
VPS39-203ENST00000561797 PSMC2P35998 433 aaKnown RBP16.72■□□□□ 0.27
VPS39-203ENST00000561797 GRIK1P39086 918 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 PRCPP42785 496 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 MAGEA11P43364 429 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 UBXN2BQ14CS0 331 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 ZACNQ401N2 412 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 ZNF658Q5TYW1 1059 aaPredicted RBP16.72■□□□□ 0.27
VPS39-203ENST00000561797 SV2AQ7L0J3 742 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 TMEM150AQ86TG1 271 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 CCDC105Q8IYK2 499 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 MAB21L3Q8N8X9 362 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 PJA1Q8NG27 643 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 MYCBPAPQ8TBZ2 947 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 IRF7Q92985 503 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 EEF2KMTQ96G04 330 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 PCED1BQ96HM7 432 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 TIGD1Q96MW7 591 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 GSDMAQ96QA5 445 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 SLC46A2Q9BY10 475 aa16.72■□□□□ 0.27
VPS39-203ENST00000561797 SMG9Q9H0W8 520 aaKnown RBP16.72■□□□□ 0.27
VPS39-203ENST00000561797 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.72■□□□□ 0.272e-10■■■■■ 319.1
VPS39-203ENST00000561797 HOOK1Q9UJC3 728 aaKnown RBP16.72■□□□□ 0.27
VPS39-203ENST00000561797 MTF2Q9Y483 593 aaPredicted RBP16.72■□□□□ 0.27
VPS39-203ENST00000561797 IKBKBO14920 756 aa16.71■□□□□ 0.27
VPS39-203ENST00000561797 GADD45BO75293 160 aaPredicted RBP16.71■□□□□ 0.27
VPS39-203ENST00000561797 NOL4O94818 638 aa16.71■□□□□ 0.27
VPS39-203ENST00000561797 HLA-DRAP01903 254 aa16.71■□□□□ 0.27
VPS39-203ENST00000561797 PIK3CAP42336 1068 aa16.71■□□□□ 0.27
VPS39-203ENST00000561797 SGSM1Q2NKQ1 1148 aa16.71■□□□□ 0.27
VPS39-203ENST00000561797 ZCWPW2Q504Y3 356 aa16.71■□□□□ 0.27
VPS39-203ENST00000561797 TXNDC8Q6A555 127 aa16.71■□□□□ 0.27
VPS39-203ENST00000561797 ISM2Q6H9L7 571 aa16.71■□□□□ 0.27
VPS39-203ENST00000561797 SPOPLQ6IQ16 392 aa16.71■□□□□ 0.27
VPS39-203ENST00000561797 INTS8Q75QN2 995 aaKnown RBP16.71■□□□□ 0.27
VPS39-203ENST00000561797 ALYREFQ86V81 257 aaKnown RBP16.71■□□□□ 0.27
VPS39-203ENST00000561797 MRPS31Q92665 395 aaKnown RBP16.71■□□□□ 0.27
VPS39-203ENST00000561797 DNASE1L2Q92874 299 aa16.71■□□□□ 0.27
VPS39-203ENST00000561797 DDX23Q9BUQ8 820 aaKnown RBP16.71■□□□□ 0.27
VPS39-203ENST00000561797 SDCBP2Q9H190 292 aa16.71■□□□□ 0.27
VPS39-203ENST00000561797 IRF2BPLQ9H1B7 796 aa16.71■□□□□ 0.27
VPS39-203ENST00000561797 VRTNQ9H8Y1 702 aa16.71■□□□□ 0.27
VPS39-203ENST00000561797 UXTQ9UBK9 157 aaPredicted RBP16.71■□□□□ 0.27
VPS39-203ENST00000561797 CIZ1Q9ULV3 898 aaPredicted RBP16.71■□□□□ 0.27
VPS39-203ENST00000561797 MYO16Q9Y6X6 1858 aa16.71■□□□□ 0.27
VPS39-203ENST00000561797 FAM170BA6NMN3 283 aa16.7■□□□□ 0.26
VPS39-203ENST00000561797 PRAMEF12O95522 483 aa16.7■□□□□ 0.26
VPS39-203ENST00000561797 ANXA13P27216 316 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms