RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 TMEM191BP0C7N4 346 aa20.41■□□□□ 0.86
VPS35-202ENST00000561713 HAPLN1P10915 354 aaPredicted RBP20.41■□□□□ 0.86
VPS35-202ENST00000561713 PAX3P23760 479 aa20.41■□□□□ 0.86
VPS35-202ENST00000561713 HOXD13P35453 343 aa20.41■□□□□ 0.86
VPS35-202ENST00000561713 NT5DC4Q86YG4 428 aa20.41■□□□□ 0.86
VPS35-202ENST00000561713 GPD1LQ8N335 351 aa20.41■□□□□ 0.86
VPS35-202ENST00000561713 OR5B17Q8NGF7 314 aa20.41■□□□□ 0.86
VPS35-202ENST00000561713 ZNF396Q96N95 335 aaPredicted RBP20.41■□□□□ 0.86
VPS35-202ENST00000561713 GCNAQ96QF7 691 aa20.41■□□□□ 0.86
VPS35-202ENST00000561713 TASP1Q9H6P5 420 aa20.41■□□□□ 0.86
VPS35-202ENST00000561713 MYO16Q9Y6X6 1858 aa20.41■□□□□ 0.86
VPS35-202ENST00000561713 WEE1P30291 646 aa20.4■□□□□ 0.86
VPS35-202ENST00000561713 PNPLA4P41247 253 aa20.4■□□□□ 0.86
VPS35-202ENST00000561713 TUFMP49411 452 aaKnown RBP20.4■□□□□ 0.86
VPS35-202ENST00000561713 PLCB2Q00722 1185 aa20.4■□□□□ 0.86
VPS35-202ENST00000561713 TSPY1Q01534 308 aa20.4■□□□□ 0.86
VPS35-202ENST00000561713 POU5F1Q01860 360 aaKnown RBP20.4■□□□□ 0.86
VPS35-202ENST00000561713 PKP1Q13835 747 aa20.4■□□□□ 0.86
VPS35-202ENST00000561713 TAF12Q16514 161 aa20.4■□□□□ 0.86
VPS35-202ENST00000561713 ITPRIPL2Q3MIP1 535 aa20.4■□□□□ 0.86
VPS35-202ENST00000561713 AASDHQ4L235 1098 aaPredicted RBP20.4■□□□□ 0.86
VPS35-202ENST00000561713 IL31Q6EBC2 164 aa20.4■□□□□ 0.86
VPS35-202ENST00000561713 CSGALNACT2Q8N6G5 542 aa20.4■□□□□ 0.86
VPS35-202ENST00000561713 SPRYD3Q8NCJ5 442 aa20.4■□□□□ 0.86
VPS35-202ENST00000561713 SPPL2BQ8TCT7 592 aa20.4■□□□□ 0.86
VPS35-202ENST00000561713 SLC46A2Q9BY10 475 aa20.4■□□□□ 0.86
VPS35-202ENST00000561713 RXFP3Q9NSD7 469 aa20.4■□□□□ 0.86
VPS35-202ENST00000561713 KBTBD4Q9NVX7 518 aa20.4■□□□□ 0.86
VPS35-202ENST00000561713 DDX43Q9NXZ2 648 aaKnown RBP20.4■□□□□ 0.86
VPS35-202ENST00000561713 HSFX1Q9UBD0 423 aa20.4■□□□□ 0.86
VPS35-202ENST00000561713 SNX9Q9Y5X1 595 aa20.4■□□□□ 0.86
VPS35-202ENST00000561713 SDK1Q7Z5N4 2213 aa20.39■□□□□ 0.86
VPS35-202ENST00000561713 PPP6R2O75170 966 aa20.39■□□□□ 0.85
VPS35-202ENST00000561713 LDHAP00338 332 aaKnown RBP20.39■□□□□ 0.85
VPS35-202ENST00000561713 KBTBD6Q86V97 674 aa20.39■□□□□ 0.85
VPS35-202ENST00000561713 HSCBQ8IWL3 235 aa20.39■□□□□ 0.85
VPS35-202ENST00000561713 DCP1BQ8IZD4 617 aaKnown RBP20.39■□□□□ 0.85
VPS35-202ENST00000561713 ADGRF2Q8IZF7 708 aa20.39■□□□□ 0.85
VPS35-202ENST00000561713 GAB3Q8WWW8 586 aa20.39■□□□□ 0.85
VPS35-202ENST00000561713 DDX1Q92499 740 aaKnown RBP20.39■□□□□ 0.85
VPS35-202ENST00000561713 BLZF1Q9H2G9 400 aa20.39■□□□□ 0.85
VPS35-202ENST00000561713 TMEM206Q9H813 350 aa20.39■□□□□ 0.85
VPS35-202ENST00000561713 GKN1Q9NS71 199 aa20.39■□□□□ 0.85
VPS35-202ENST00000561713 THG1LQ9NWX6 298 aaKnown RBP20.39■□□□□ 0.85
VPS35-202ENST00000561713 HSPBP1Q9NZL4 362 aa20.39■□□□□ 0.85
VPS35-202ENST00000561713 ITGA11Q9UKX5 1188 aa20.39■□□□□ 0.85
VPS35-202ENST00000561713 MAGED2Q9UNF1 606 aaPredicted RBP20.39■□□□□ 0.85
VPS35-202ENST00000561713 PCDHB5Q9Y5E4 795 aa20.39■□□□□ 0.85
VPS35-202ENST00000561713 KIAA1549LQ6ZVL6 1849 aa20.39■□□□□ 0.85
VPS35-202ENST00000561713 OTOL1A6NHN0 477 aaPredicted RBP20.38■□□□□ 0.85
VPS35-202ENST00000561713 CUTAO60888 179 aa20.38■□□□□ 0.85
VPS35-202ENST00000561713 HUS1O60921 280 aa20.38■□□□□ 0.85
VPS35-202ENST00000561713 PRPF40AO75400 957 aaKnown RBP20.38■□□□□ 0.85
VPS35-202ENST00000561713 RPP40O75818 363 aaKnown RBP20.38■□□□□ 0.85
VPS35-202ENST00000561713 YEATS4O95619 227 aa20.38■□□□□ 0.85
VPS35-202ENST00000561713 F13A1P00488 732 aa20.38■□□□□ 0.85
VPS35-202ENST00000561713 CDC25CP30307 473 aa20.38■□□□□ 0.85
VPS35-202ENST00000561713 RAP1GAPP47736 663 aa20.38■□□□□ 0.85
VPS35-202ENST00000561713 INTS6LQ5JSJ4 861 aaKnown RBP20.38■□□□□ 0.85
VPS35-202ENST00000561713 FAM26FQ5R3K3 315 aa20.38■□□□□ 0.85
VPS35-202ENST00000561713 FSTL4Q6MZW2 842 aa20.38■□□□□ 0.85
VPS35-202ENST00000561713 TMEM150AQ86TG1 271 aa20.38■□□□□ 0.85
VPS35-202ENST00000561713 NELFCDQ8IXH7 590 aa20.38■□□□□ 0.85
VPS35-202ENST00000561713 GRAMD1CQ8IYS0 662 aa20.38■□□□□ 0.85
VPS35-202ENST00000561713 LRRC52Q8N7C0 313 aa20.38■□□□□ 0.85
VPS35-202ENST00000561713 C12orf50Q8NA57 414 aaPredicted RBP20.38■□□□□ 0.85
VPS35-202ENST00000561713 C2orf15Q8WU43 125 aaKnown RBP20.38■□□□□ 0.85
VPS35-202ENST00000561713 CACTINQ8WUQ7 758 aaKnown RBP20.38■□□□□ 0.85
VPS35-202ENST00000561713 SNX21Q969T3 373 aa20.38■□□□□ 0.85
VPS35-202ENST00000561713 CHFRQ96EP1 664 aa20.38■□□□□ 0.85
VPS35-202ENST00000561713 POLR3BQ9NW08 1133 aaPredicted RBP20.38■□□□□ 0.85
VPS35-202ENST00000561713 CCL26Q9Y258 94 aa20.38■□□□□ 0.85
VPS35-202ENST00000561713 CNOT1A5YKK6 2376 aaKnown RBP20.38■□□□□ 0.85
VPS35-202ENST00000561713 TM4SF5O14894 197 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 TADA3O75528 432 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 ZNF806P0C7X5 589 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 ZSCAN22P10073 491 aaPredicted RBP20.37■□□□□ 0.85
VPS35-202ENST00000561713 HMGA1P17096 107 aaKnown RBP20.37■□□□□ 0.85
VPS35-202ENST00000561713 CYP2F1P24903 491 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 CYP2J2P51589 502 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 LIMK1P53667 647 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 PSMC1P62191 440 aaKnown RBP20.37■□□□□ 0.85
VPS35-202ENST00000561713 DDR2Q16832 855 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 TMEM196Q5HYL7 178 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 N4BP2L1Q5TBK1 243 aaPredicted RBP20.37■□□□□ 0.85
VPS35-202ENST00000561713 TRIM68Q6AZZ1 485 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 CACNA2D4Q7Z3S7 1137 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 CMTM8Q8IZV2 173 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 RIN3Q8TB24 985 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 ANKRD36BP1Q96IX9 119 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 PKMYT1Q99640 499 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 FAM83CQ9BQN1 747 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 HPS4Q9NQG7 708 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 INTS13Q9NVM9 706 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 ASPMQ8IZT6 3477 aa20.37■□□□□ 0.85
VPS35-202ENST00000561713 CLIC2O15247 247 aa20.36■□□□□ 0.85
VPS35-202ENST00000561713 POLR2DO15514 142 aaKnown RBP20.36■□□□□ 0.85
VPS35-202ENST00000561713 EPN2O95208 641 aa20.36■□□□□ 0.85
VPS35-202ENST00000561713 HSP90AA1P07900 732 aaKnown RBP20.36■□□□□ 0.85
VPS35-202ENST00000561713 NLRP12P59046 1061 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms