RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 ZSWIM2Q8NEG5 633 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 OSCP1Q8WVF1 389 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 FUBP3Q96I24 572 aaKnown RBP eCLIP17.67■□□□□ 0.42
CLN3-208ENST00000561505 EPSTI1Q96J88 318 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 CEP295NLQ96MC4 621 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 PI4K2AQ9BTU6 479 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 ZHX3Q9H4I2 956 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 ECT2Q9H8V3 914 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 EML5Q05BV3 1969 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 MYMKA6NI61 221 aa17.66■□□□□ 0.42
CLN3-208ENST00000561505 AXIN1O15169 862 aa17.66■□□□□ 0.42
CLN3-208ENST00000561505 RNF40O75150 1001 aa17.66■□□□□ 0.42
CLN3-208ENST00000561505 PRPF40AO75400 957 aaKnown RBP17.66■□□□□ 0.42
CLN3-208ENST00000561505 MAGEA11P43364 429 aa17.66■□□□□ 0.42
CLN3-208ENST00000561505 CDR1P51861 262 aa17.66■□□□□ 0.42
CLN3-208ENST00000561505 PLK5Q496M5 336 aa17.66■□□□□ 0.42
CLN3-208ENST00000561505 DPH6Q7L8W6 267 aa17.66■□□□□ 0.42
CLN3-208ENST00000561505 OSTM1Q86WC4 334 aa17.66■□□□□ 0.42
CLN3-208ENST00000561505 TOP6BLQ8N6T0 577 aa17.66■□□□□ 0.42
CLN3-208ENST00000561505 P2RY13Q9BPV8 354 aa17.66■□□□□ 0.42
CLN3-208ENST00000561505 DUSP15Q9H1R2 295 aaPredicted RBP17.66■□□□□ 0.42
CLN3-208ENST00000561505 SIX4Q9UIU6 781 aa17.66■□□□□ 0.42
CLN3-208ENST00000561505 FBXO2Q9UK22 296 aaPredicted RBP17.66■□□□□ 0.42
CLN3-208ENST00000561505 ITGA11Q9UKX5 1188 aa17.66■□□□□ 0.42
CLN3-208ENST00000561505 AGAP1Q9UPQ3 857 aa17.66■□□□□ 0.42
CLN3-208ENST00000561505 SLC8A2Q9UPR5 921 aa17.66■□□□□ 0.42
CLN3-208ENST00000561505 SMC3Q9UQE7 1217 aa17.66■□□□□ 0.42
CLN3-208ENST00000561505 SRPRBQ9Y5M8 271 aaKnown RBP17.66■□□□□ 0.42
CLN3-208ENST00000561505 TCHHQ07283 1943 aa17.66■□□□□ 0.42
CLN3-208ENST00000561505 HUS1O60921 280 aa17.65■□□□□ 0.42
CLN3-208ENST00000561505 ITGB3P05106 788 aa17.65■□□□□ 0.42
CLN3-208ENST00000561505 CYP2F1P24903 491 aa17.65■□□□□ 0.42
CLN3-208ENST00000561505 POLR2BP30876 1174 aaKnown RBP17.65■□□□□ 0.42
CLN3-208ENST00000561505 LHX1P48742 406 aa17.65■□□□□ 0.42
CLN3-208ENST00000561505 PXNP49023 591 aaPredicted RBP17.65■□□□□ 0.42
CLN3-208ENST00000561505 MTF1Q14872 753 aa17.65■□□□□ 0.42
CLN3-208ENST00000561505 DDR2Q16832 855 aa17.65■□□□□ 0.42
CLN3-208ENST00000561505 EML3Q32P44 896 aa17.65■□□□□ 0.42
CLN3-208ENST00000561505 CACTINQ8WUQ7 758 aaKnown RBP17.65■□□□□ 0.42
CLN3-208ENST00000561505 EXOC4Q96A65 974 aa17.65■□□□□ 0.42
CLN3-208ENST00000561505 ACCSQ96QU6 501 aa17.65■□□□□ 0.42
CLN3-208ENST00000561505 SLC22A12Q96S37 553 aa17.65■□□□□ 0.42
CLN3-208ENST00000561505 FAM213AQ9BRX8 229 aa17.65■□□□□ 0.42
CLN3-208ENST00000561505 LSM14BQ9BX40 385 aaKnown RBP17.65■□□□□ 0.42
CLN3-208ENST00000561505 DDX43Q9NXZ2 648 aaKnown RBP17.65■□□□□ 0.42
CLN3-208ENST00000561505 GTF3C4Q9UKN8 822 aa17.65■□□□□ 0.42
CLN3-208ENST00000561505 EXOC7Q9UPT5 735 aa17.65■□□□□ 0.42
CLN3-208ENST00000561505 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.65■□□□□ 0.42
CLN3-208ENST00000561505 CHD6Q8TD26 2715 aa17.65■□□□□ 0.42
CLN3-208ENST00000561505 USP17L7P0C7H9 530 aa17.64■□□□□ 0.41
CLN3-208ENST00000561505 PFKLP17858 780 aa17.64■□□□□ 0.41
CLN3-208ENST00000561505 MYL7Q01449 175 aa17.64■□□□□ 0.41
CLN3-208ENST00000561505 ALCAMQ13740 583 aa17.64■□□□□ 0.41
CLN3-208ENST00000561505 SOWAHAQ2M3V2 549 aa17.64■□□□□ 0.41
CLN3-208ENST00000561505 N4BP2L1Q5TBK1 243 aaPredicted RBP17.64■□□□□ 0.41
CLN3-208ENST00000561505 STPG1Q5TH74 334 aa17.64■□□□□ 0.41
CLN3-208ENST00000561505 NAIF1Q69YI7 327 aaPredicted RBP17.64■□□□□ 0.41
CLN3-208ENST00000561505 CC2D1AQ6P1N0 951 aaPredicted RBP17.64■□□□□ 0.41
CLN3-208ENST00000561505 DYMQ7RTS9 669 aa17.64■□□□□ 0.41
CLN3-208ENST00000561505 CPA6Q8N4T0 437 aa17.64■□□□□ 0.41
CLN3-208ENST00000561505 SPATA17Q96L03 361 aa17.64■□□□□ 0.41
CLN3-208ENST00000561505 CYP2S1Q96SQ9 504 aa17.64■□□□□ 0.41
CLN3-208ENST00000561505 MRPL44Q9H9J2 332 aaKnown RBP17.64■□□□□ 0.41
CLN3-208ENST00000561505 VPS45Q9NRW7 570 aa17.64■□□□□ 0.41
CLN3-208ENST00000561505 PCDHB13Q9Y5F0 798 aa17.64■□□□□ 0.41
CLN3-208ENST00000561505 SDK1Q7Z5N4 2213 aa17.64■□□□□ 0.41
CLN3-208ENST00000561505 CHRM1P11229 460 aaPredicted RBP17.63■□□□□ 0.41
CLN3-208ENST00000561505 PCSK1P29120 753 aa17.63■□□□□ 0.41
CLN3-208ENST00000561505 MPLP40238 635 aa17.63■□□□□ 0.41
CLN3-208ENST00000561505 CASP5P51878 434 aa17.63■□□□□ 0.41
CLN3-208ENST00000561505 RBP5P82980 135 aa17.63■□□□□ 0.41
CLN3-208ENST00000561505 TFAMQ00059 246 aaKnown RBP17.63■□□□□ 0.41
CLN3-208ENST00000561505 CUL4AQ13619 759 aa17.63■□□□□ 0.41
CLN3-208ENST00000561505 ST3GAL2Q16842 350 aa17.63■□□□□ 0.41
CLN3-208ENST00000561505 GAB4Q2WGN9 574 aa17.63■□□□□ 0.41
CLN3-208ENST00000561505 AASDHQ4L235 1098 aaPredicted RBP17.63■□□□□ 0.41
CLN3-208ENST00000561505 SDHAF4Q5VUM1 108 aa17.63■□□□□ 0.41
CLN3-208ENST00000561505 IL31Q6EBC2 164 aa17.63■□□□□ 0.41
CLN3-208ENST00000561505 SV2BQ7L1I2 683 aa17.63■□□□□ 0.41
CLN3-208ENST00000561505 STKLD1Q8NE28 680 aa17.63■□□□□ 0.41
CLN3-208ENST00000561505 CD101Q93033 1021 aa17.63■□□□□ 0.41
CLN3-208ENST00000561505 ATP2A3Q93084 1043 aa17.63■□□□□ 0.41
CLN3-208ENST00000561505 POLR3BQ9NW08 1133 aaPredicted RBP17.63■□□□□ 0.41
CLN3-208ENST00000561505 DUS2Q9NX74 493 aaKnown RBP17.63■□□□□ 0.41
CLN3-208ENST00000561505 RBAKQ9NYW8 714 aaPredicted RBP17.63■□□□□ 0.41
CLN3-208ENST00000561505 CCDC39Q9UFE4 941 aa17.63■□□□□ 0.41
CLN3-208ENST00000561505 ARHGAP26Q9UNA1 814 aa17.63■□□□□ 0.41
CLN3-208ENST00000561505 MAGED2Q9UNF1 606 aaPredicted RBP17.63■□□□□ 0.41
CLN3-208ENST00000561505 CLIC4Q9Y696 253 aa17.63■□□□□ 0.41
CLN3-208ENST00000561505 ANAPC1Q9H1A4 1944 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 CEP295Q9C0D2 2601 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 BCLAF3A2AJT9 711 aaKnown RBP17.62■□□□□ 0.41
CLN3-208ENST00000561505 KIAA0391O15091 583 aaKnown RBP17.62■□□□□ 0.41
CLN3-208ENST00000561505 CCDC192P0DO97 292 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 ZXDBP98169 803 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 CCDC142Q17RM4 750 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 VSTM1Q6UX27 236 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 RASSF3Q86WH2 238 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 CSGALNACT2Q8N6G5 542 aa17.62■□□□□ 0.41
CLN3-208ENST00000561505 C12orf50Q8NA57 414 aaPredicted RBP17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms