RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 PCDH10Q9P2E7 1040 aa11.96□□□□□ -0.49
SNX1-212ENST00000560861 CHORDC1Q9UHD1 332 aaPredicted RBP11.96□□□□□ -0.49
SNX1-212ENST00000560861 DSEQ9UL01 958 aa11.96□□□□□ -0.49
SNX1-212ENST00000560861 JRKLQ9Y4A0 524 aa11.96□□□□□ -0.49
SNX1-212ENST00000560861 TIMM13Q9Y5L4 95 aaPredicted RBP11.96□□□□□ -0.49
SNX1-212ENST00000560861 COL4A4P53420 1690 aaPredicted RBP11.95□□□□□ -0.5
SNX1-212ENST00000560861 TBKBP1A7MCY6 615 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 ENC1O14682 589 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 NRP1O14786 923 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 NCK2O43639 380 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 BAIAP3O94812 1187 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 OAZ2O95190 189 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 ERBB2P04626 1255 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 GALTP07902 379 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 CCDC130P13994 396 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 ACAT1P24752 427 aaKnown RBP11.95□□□□□ -0.5
SNX1-212ENST00000560861 NOP2P46087 812 aaKnown RBP11.95□□□□□ -0.5
SNX1-212ENST00000560861 OR1G1P47890 313 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 PSMC1P62191 440 aaKnown RBP11.95□□□□□ -0.5
SNX1-212ENST00000560861 RNASELQ05823 741 aaKnown RBP11.95□□□□□ -0.5
SNX1-212ENST00000560861 PDE4CQ08493 712 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 MAMLD1Q13495 774 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 MRPL58Q14197 206 aaKnown RBP11.95□□□□□ -0.5
SNX1-212ENST00000560861 LIN9Q5TKA1 542 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 PRPF38BQ5VTL8 546 aaKnown RBP11.95□□□□□ -0.5
SNX1-212ENST00000560861 FAM171BQ6P995 826 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 NT5DC3Q86UY8 548 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 ERICH1Q86X53 443 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 XYLT1Q86Y38 959 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 RNF168Q8IYW5 571 aaPredicted RBP11.95□□□□□ -0.5
SNX1-212ENST00000560861 ABI1Q8IZP0 508 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 ANKRD52Q8NB46 1076 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 OR10T2Q8NGX3 314 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 ZNF564Q8TBZ8 553 aaPredicted RBP11.95□□□□□ -0.5
SNX1-212ENST00000560861 BCL7CQ8WUZ0 217 aaPredicted RBP11.95□□□□□ -0.5
SNX1-212ENST00000560861 SLC35F5Q8WV83 523 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 MCRS1Q96EZ8 462 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 ACBD6Q9BR61 282 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 B3GNT5Q9BYG0 378 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 TRIM7Q9C029 511 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 GOLPH3Q9H4A6 298 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 CDH9Q9ULB4 789 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 PRG3Q9Y2Y8 225 aaPredicted RBP11.95□□□□□ -0.5
SNX1-212ENST00000560861 CEP83Q9Y592 693 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 MRFAP1Q9Y605 127 aa11.95□□□□□ -0.5
SNX1-212ENST00000560861 ARHGEF37A1IGU5 675 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 MYBPHLA2RUH7 354 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 TMEM191CA6NGB0 347 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 TULP2O00295 520 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 SYN3O14994 580 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 FTCDO95954 541 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 AMHP03971 560 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 ACRP10323 421 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 PRLRP16471 622 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 FGFR3P22607 806 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 EPHB4P54760 987 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 PLCB3Q01970 1234 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 BST2Q10589 180 aaKnown RBP11.94□□□□□ -0.5
SNX1-212ENST00000560861 ZNF268Q14587 947 aaPredicted RBP11.94□□□□□ -0.5
SNX1-212ENST00000560861 INTS6LQ5JSJ4 861 aaKnown RBP11.94□□□□□ -0.5
SNX1-212ENST00000560861 PMF1Q6P1K2 205 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 TMEM110Q86TL2 294 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 TMEM173Q86WV6 379 aaPredicted RBP11.94□□□□□ -0.5
SNX1-212ENST00000560861 C3orf20Q8ND61 904 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 SLC2A14Q8TDB8 520 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 CD101Q93033 1021 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 HES6Q96HZ4 224 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 FAM193BQ96PV7 902 aaPredicted RBP11.94□□□□□ -0.5
SNX1-212ENST00000560861 COLEC11Q9BWP8 271 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 CYLDQ9NQC7 956 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 CDC23Q9UJX2 597 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 ADAM28Q9UKQ2 775 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 SNX12Q9UMY4 172 aa11.94□□□□□ -0.5
SNX1-212ENST00000560861 RIOK3O14730 519 aaKnown RBP11.93□□□□□ -0.5
SNX1-212ENST00000560861 DDX3YO15523 660 aaKnown RBP11.93□□□□□ -0.5
SNX1-212ENST00000560861 URI1O94763 535 aaPredicted RBP11.93□□□□□ -0.5
SNX1-212ENST00000560861 GJB6O95452 261 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 PCSK1P29120 753 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 ADORA2BP29275 332 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 PLA2G4AP47712 749 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 BCAT1P54687 386 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 NAP1L1P55209 391 aaKnown RBP11.93□□□□□ -0.5
SNX1-212ENST00000560861 ZNF252P-AS1Q0IIN9 211 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 PPIGQ13427 754 aaKnown RBP eCLIP11.93□□□□□ -0.52e-8■■■□□ 15.4
SNX1-212ENST00000560861 TUBB2AQ13885 445 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 MDH1BQ5I0G3 518 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 CYP4A22Q5TCH4 519 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 OVOS1Q6IE37 1185 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 PHLDB2Q86SQ0 1253 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 FAM35AQ86V20 835 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 LRRTM3Q86VH5 581 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 METTL23Q86XA0 190 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 CPNE8Q86YQ8 564 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 CMTR2Q8IYT2 770 aaKnown RBP11.93□□□□□ -0.5
SNX1-212ENST00000560861 SYCE1Q8N0S2 351 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 ZMIZ2Q8NF64 920 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 FEZF2Q8TBJ5 459 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 MYCBPAPQ8TBZ2 947 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 C18orf8Q96DM3 657 aa11.93□□□□□ -0.5
SNX1-212ENST00000560861 TUBB2BQ9BVA1 445 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms