RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 OBSL1O75147 1896 aa15.06■□□□□ 0
LDLR-213ENST00000560502 A0A1B0GTH6 734 aa15.05■□□□□ -0
LDLR-213ENST00000560502 EPHB3P54753 998 aa15.05■□□□□ -0
LDLR-213ENST00000560502 SATB1Q01826 763 aa15.05■□□□□ -0
LDLR-213ENST00000560502 PPP2R5DQ14738 602 aa15.05■□□□□ -0
LDLR-213ENST00000560502 ZCWPW2Q504Y3 356 aa15.05■□□□□ -0
LDLR-213ENST00000560502 TCP11X2Q5H9J9 407 aa15.05■□□□□ -0
LDLR-213ENST00000560502 LAIR1Q6GTX8 287 aa15.05■□□□□ -0
LDLR-213ENST00000560502 OVOS1Q6IE37 1185 aa15.05■□□□□ -0
LDLR-213ENST00000560502 C1orf228Q6PIY5 440 aa15.05■□□□□ -0
LDLR-213ENST00000560502 GAREM2Q75VX8 874 aa15.05■□□□□ -0
LDLR-213ENST00000560502 USP37Q86T82 979 aa15.05■□□□□ -0
LDLR-213ENST00000560502 DRC7Q8IY82 874 aa15.05■□□□□ -0
LDLR-213ENST00000560502 SPEM1Q8N4L4 309 aa15.05■□□□□ -0
LDLR-213ENST00000560502 TTC9BQ8N6N2 239 aa15.05■□□□□ -0
LDLR-213ENST00000560502 CELF5Q8N6W0 485 aaKnown RBP15.05■□□□□ -0
LDLR-213ENST00000560502 PSMG2Q969U7 264 aa15.05■□□□□ -0
LDLR-213ENST00000560502 BICD1Q96G01 975 aa15.05■□□□□ -0
LDLR-213ENST00000560502 CEP63Q96MT8 703 aa15.05■□□□□ -0
LDLR-213ENST00000560502 LRRC3BQ96PB8 259 aa15.05■□□□□ -0
LDLR-213ENST00000560502 ST6GALNAC4Q9H4F1 302 aa15.05■□□□□ -0
LDLR-213ENST00000560502 SLITRK6Q9H5Y7 841 aa15.05■□□□□ -0
LDLR-213ENST00000560502 SAMSN1Q9NSI8 373 aaKnown RBP15.05■□□□□ -0
LDLR-213ENST00000560502 HSFX1Q9UBD0 423 aa15.05■□□□□ -0
LDLR-213ENST00000560502 TBX20Q9UMR3 447 aa15.05■□□□□ -0
LDLR-213ENST00000560502 USP18Q9UMW8 372 aa15.05■□□□□ -0
LDLR-213ENST00000560502 MAPK8IP1Q9UQF2 711 aa15.05■□□□□ -0
LDLR-213ENST00000560502 ASB3Q9Y575 518 aa15.05■□□□□ -0
LDLR-213ENST00000560502 SPAG17Q6Q759 2223 aa15.05■□□□□ -0
LDLR-213ENST00000560502 A0A0B4J269 797 aa15.04■□□□□ -0
LDLR-213ENST00000560502 KCNJ18B7U540 433 aa15.04■□□□□ -0
LDLR-213ENST00000560502 HNRNPDLO14979 420 aaKnown RBP15.04■□□□□ -0
LDLR-213ENST00000560502 OGTO15294 1046 aa15.04■□□□□ -0
LDLR-213ENST00000560502 XPOTO43592 962 aaKnown RBP15.04■□□□□ -0
LDLR-213ENST00000560502 GNA14O95837 355 aa15.04■□□□□ -0
LDLR-213ENST00000560502 WEE1P30291 646 aa15.04■□□□□ -0
LDLR-213ENST00000560502 MATR3P43243 847 aaKnown RBP eCLIP15.04■□□□□ -0
LDLR-213ENST00000560502 CXCL12P48061 93 aa15.04■□□□□ -0
LDLR-213ENST00000560502 SOX9P48436 509 aa15.04■□□□□ -0
LDLR-213ENST00000560502 LIG4P49917 911 aa15.04■□□□□ -0
LDLR-213ENST00000560502 LILRA4P59901 499 aa15.04■□□□□ -0
LDLR-213ENST00000560502 FKBP3Q00688 224 aaKnown RBP15.04■□□□□ -0
LDLR-213ENST00000560502 KCNJ12Q14500 433 aa15.04■□□□□ -0
LDLR-213ENST00000560502 NFIL3Q16649 462 aa15.04■□□□□ -0
LDLR-213ENST00000560502 ANKRD40Q6AI12 368 aa15.04■□□□□ -0
LDLR-213ENST00000560502 SLC39A4Q6P5W5 647 aa15.04■□□□□ -0
LDLR-213ENST00000560502 TXNDC11Q6PKC3 985 aa15.04■□□□□ -0
LDLR-213ENST00000560502 DSTYKQ6XUX3 929 aa15.04■□□□□ -0
LDLR-213ENST00000560502 DNAJB7Q7Z6W7 309 aaPredicted RBP15.04■□□□□ -0
LDLR-213ENST00000560502 ARID3BQ8IVW6 561 aaPredicted RBP15.04■□□□□ -0
LDLR-213ENST00000560502 ZC3H3Q8IXZ2 948 aaKnown RBP15.04■□□□□ -0
LDLR-213ENST00000560502 ATAD1Q8NBU5 361 aa15.04■□□□□ -0
LDLR-213ENST00000560502 OR10T2Q8NGX3 314 aa15.04■□□□□ -0
LDLR-213ENST00000560502 GOLGA5Q8TBA6 731 aa15.04■□□□□ -0
LDLR-213ENST00000560502 ZNF507Q8TCN5 953 aa15.04■□□□□ -0
LDLR-213ENST00000560502 CSGALNACT1Q8TDX6 532 aa15.04■□□□□ -0
LDLR-213ENST00000560502 SCFD1Q8WVM8 642 aa15.04■□□□□ -0
LDLR-213ENST00000560502 HVCN1Q96D96 273 aa15.04■□□□□ -0
LDLR-213ENST00000560502 TMEM209Q96SK2 561 aa15.04■□□□□ -0
LDLR-213ENST00000560502 DUSP9Q99956 384 aaKnown RBP15.04■□□□□ -0
LDLR-213ENST00000560502 RTKNQ9BST9 563 aa15.04■□□□□ -0
LDLR-213ENST00000560502 ZHX3Q9H4I2 956 aa15.04■□□□□ -0
LDLR-213ENST00000560502 C8orf33Q9H7E9 229 aaPredicted RBP15.04■□□□□ -0
LDLR-213ENST00000560502 MRPL44Q9H9J2 332 aaKnown RBP15.04■□□□□ -0
LDLR-213ENST00000560502 OBP2AQ9NY56 170 aa15.04■□□□□ -0
LDLR-213ENST00000560502 CPSF3Q9UKF6 684 aaKnown RBP15.04■□□□□ -0
LDLR-213ENST00000560502 CDV3Q9UKY7 258 aaKnown RBP15.04■□□□□ -0
LDLR-213ENST00000560502 TRAF3IP3Q9Y228 551 aa15.04■□□□□ -0
LDLR-213ENST00000560502 SLC27A5Q9Y2P5 690 aa15.04■□□□□ -0
LDLR-213ENST00000560502 PCDHB13Q9Y5F0 798 aa15.04■□□□□ -0
LDLR-213ENST00000560502 MYBPHLA2RUH7 354 aa15.03■□□□□ -0
LDLR-213ENST00000560502 TRIM49BA6NDI0 452 aa15.03■□□□□ -0
LDLR-213ENST00000560502 SLC38A8A6NNN8 435 aa15.03■□□□□ -0
LDLR-213ENST00000560502 SPECC1L-ADORA2AF8WAN1 911 aa15.03■□□□□ -0
LDLR-213ENST00000560502 K7ESF4 209 aa15.03■□□□□ -0
LDLR-213ENST00000560502 PIRO00625 290 aa15.03■□□□□ -0
LDLR-213ENST00000560502 PDXKO00764 312 aa15.03■□□□□ -0
LDLR-213ENST00000560502 CALUO43852 315 aaPredicted RBP15.03■□□□□ -0
LDLR-213ENST00000560502 CYP11A1P05108 521 aa15.03■□□□□ -0
LDLR-213ENST00000560502 PAX3P23760 479 aa15.03■□□□□ -0
LDLR-213ENST00000560502 CTHP32929 405 aa15.03■□□□□ -0
LDLR-213ENST00000560502 ALDH1A3P47895 512 aa15.03■□□□□ -0
LDLR-213ENST00000560502 SNRPFP62306 86 aaKnown RBP15.03■□□□□ -0
LDLR-213ENST00000560502 DMWDQ09019 674 aa15.03■□□□□ -0
LDLR-213ENST00000560502 SPEM2Q0P670 501 aa15.03■□□□□ -0
LDLR-213ENST00000560502 LRRC32Q14392 662 aa15.03■□□□□ -0
LDLR-213ENST00000560502 LPAL2Q16609 132 aa15.03■□□□□ -0
LDLR-213ENST00000560502 KNOP1Q1ED39 458 aaKnown RBP15.03■□□□□ -0
LDLR-213ENST00000560502 C9orf57Q5W0N0 161 aa15.03■□□□□ -0
LDLR-213ENST00000560502 JADE1Q6IE81 842 aa15.03■□□□□ -0
LDLR-213ENST00000560502 Q6ZS52 159 aa15.03■□□□□ -0
LDLR-213ENST00000560502 RALGPS2Q86X27 583 aaPredicted RBP15.03■□□□□ -0
LDLR-213ENST00000560502 YAF2Q8IY57 180 aa15.03■□□□□ -0
LDLR-213ENST00000560502 MYCT1Q8N699 235 aa15.03■□□□□ -0
LDLR-213ENST00000560502 HPS3Q969F9 1004 aa15.03■□□□□ -0
LDLR-213ENST00000560502 SENP8Q96LD8 212 aa15.03■□□□□ -0
LDLR-213ENST00000560502 FIZ1Q96SL8 496 aa15.03■□□□□ -0
LDLR-213ENST00000560502 KCTD10Q9H3F6 313 aa15.03■□□□□ -0
LDLR-213ENST00000560502 RPF1Q9H9Y2 349 aaKnown RBP15.03■□□□□ -0
LDLR-213ENST00000560502 RBM12Q9NTZ6 932 aaKnown RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms