RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 CNKSR1Q969H4 720 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 CACYBPQ9HB71 228 aaKnown RBP7.42□□□□□ -1.22
USP3-210ENST00000559192 AKT3Q9Y243 479 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 USP20Q9Y2K6 914 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 TMA7Q9Y2S6 64 aaKnown RBP7.42□□□□□ -1.22
USP3-210ENST00000559192 DPPA5A6NC42 116 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 C2orf71A6NGG8 1288 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 SYCE1LA8MT33 242 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 SLC4A1P02730 911 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 BNIP1Q12981 228 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 MORF4L2Q15014 288 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 ARHGAP22Q7Z5H3 698 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 APLFQ8IW19 511 aaPredicted RBP7.42□□□□□ -1.22
USP3-210ENST00000559192 MPP4Q96JB8 637 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 KCNMB3Q9NPA1 279 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 POLLQ9UGP5 575 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 GOLGA8QA0A0J9YX86 632 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 CCDC78A2IDD5 438 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 GOLGA8OA6NCC3 632 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 GOLGA8NF8WBI6 632 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 DNALI1O14645 258 aaPredicted RBP7.42□□□□□ -1.22
USP3-210ENST00000559192 PDE5AO76074 875 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 SFNP31947 248 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 COPAP53621 1224 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 CUL2Q13617 745 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 TCHHL1Q5QJ38 904 aaPredicted RBP7.42□□□□□ -1.22
USP3-210ENST00000559192 HEATR6Q6AI08 1181 aaKnown RBP7.42□□□□□ -1.22
USP3-210ENST00000559192 IRGCQ6NXR0 463 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 HIC2Q96JB3 615 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 DHX35Q9H5Z1 703 aaKnown RBP7.42□□□□□ -1.22
USP3-210ENST00000559192 PPCSQ9HAB8 311 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 NMRK1Q9NWW6 199 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 SCAF8Q9UPN6 1271 aaKnown RBP7.42□□□□□ -1.22
USP3-210ENST00000559192 C5P01031 1676 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 A0A1W2PPM1 405 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 ZNF189O75820 626 aaPredicted RBP7.42□□□□□ -1.22
USP3-210ENST00000559192 ATP6V1C1P21283 382 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 SHMT1P34896 483 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 TAP1Q03518 808 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 KIF19Q2TAC6 998 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 DCAF12L1Q5VU92 463 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 PIGWQ7Z7B1 504 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 EPS8L1Q8TE68 723 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 ANKRD27Q96NW4 1050 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 DDX4Q9NQI0 724 aaKnown RBP7.42□□□□□ -1.22
USP3-210ENST00000559192 ZNF302Q9NR11 478 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 SAE1Q9UBE0 346 aaPredicted RBP7.42□□□□□ -1.22
USP3-210ENST00000559192 SNX5Q9Y5X3 404 aa7.42□□□□□ -1.22
USP3-210ENST00000559192 FAM237BA0A1B0GVD1 139 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 C5orf60A6NFR6 353 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 KPNA7A9QM74 516 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 POLRMTO00411 1230 aaKnown RBP7.41□□□□□ -1.22
USP3-210ENST00000559192 C21orf2O43822 256 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 NBNO60934 754 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 ESRRBO95718 433 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 ETS2P15036 469 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 SERPINB5P36952 375 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 RGS7P49802 495 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 MARSP56192 900 aaKnown RBP7.41□□□□□ -1.22
USP3-210ENST00000559192 PRAMEP78395 509 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 GABPAQ06546 454 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 PRPSAP1Q14558 356 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 ZNF568Q3ZCX4 644 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 TFDP3Q5H9I0 405 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 MOXD1Q6UVY6 613 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 HDDC2Q7Z4H3 204 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 ZNF677Q86XU0 584 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 NIM1KQ8IY84 436 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 ZCCHC9Q8N567 271 aaKnown RBP7.41□□□□□ -1.22
USP3-210ENST00000559192 FAM13CQ8NE31 585 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 RFWD2Q8NHY2 731 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 KLHL4Q9C0H6 718 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 DTNAQ9Y4J8 743 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 ADGRA3Q8IWK6 1321 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 IQCA1LA6NCM1 817 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 TM9SF1O15321 606 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 PPP1R11O60927 126 aaPredicted RBP7.41□□□□□ -1.22
USP3-210ENST00000559192 PAEPP09466 180 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 RBP3P10745 1247 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 CIITAP33076 1130 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 JAM2P57087 298 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 CDK16Q00536 496 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 SLC12A1Q13621 1099 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 LRRC8EQ6NSJ5 796 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 ZCCHC23Q6ZST2 131 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 RYBPQ8N488 228 aaPredicted RBP7.41□□□□□ -1.22
USP3-210ENST00000559192 POU5F2Q8N7G0 328 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 ZSWIM2Q8NEG5 633 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 GDPD5Q8WTR4 605 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 PYDC1Q8WXC3 89 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 ING2Q9H160 280 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 C12orf65Q9H3J6 166 aaKnown RBP7.41□□□□□ -1.22
USP3-210ENST00000559192 ZHX2Q9Y6X8 837 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 BCL9O00512 1426 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 AHCYL1O43865 530 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 TRIM16O95361 564 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 CYP1A2P05177 515 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 NPR1P16066 1061 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 GSTT1P30711 240 aa7.41□□□□□ -1.22
USP3-210ENST00000559192 GCLCP48506 637 aaPredicted RBP7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms