RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 CBX6O95503 412 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 ABHD2P08910 425 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 CXCL8P10145 99 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 EZRP15311 586 aaKnown RBP13.55□□□□□ -0.24
LDLR-207ENST00000558013 RPL22P35268 128 aaKnown RBP13.55□□□□□ -0.24
LDLR-207ENST00000558013 LACTBP83111 547 aaPredicted RBP13.55□□□□□ -0.24
LDLR-207ENST00000558013 DALRD3Q5D0E6 543 aaKnown RBP13.55□□□□□ -0.24
LDLR-207ENST00000558013 DCAF15Q66K64 600 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 LVRNQ6Q4G3 990 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 C3orf62Q6ZUJ4 267 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 WDR49Q8IV35 697 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 SMC6Q96SB8 1091 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 MYCBPQ99417 103 aaPredicted RBP13.55□□□□□ -0.24
LDLR-207ENST00000558013 ASCC2Q9H1I8 757 aaPredicted RBP13.55□□□□□ -0.24
LDLR-207ENST00000558013 METTL5Q9NRN9 209 aaKnown RBP13.55□□□□□ -0.24
LDLR-207ENST00000558013 RABGEF1Q9UJ41 708 aa13.55□□□□□ -0.24
LDLR-207ENST00000558013 CFAP73A6NFT4 308 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 PRKCBP05771 671 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 MSH2P43246 934 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 GCLCP48506 637 aaPredicted RBP13.54□□□□□ -0.24
LDLR-207ENST00000558013 PSMC1P62191 440 aaKnown RBP13.54□□□□□ -0.24
LDLR-207ENST00000558013 IRX3P78415 501 aaPredicted RBP13.54□□□□□ -0.24
LDLR-207ENST00000558013 LMNB2Q03252 620 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 MORF4L2Q15014 288 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 MAPK6Q16659 721 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 BBS9Q3SYG4 887 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 NCAPG2Q86XI2 1143 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 NSMCE1Q8WV22 266 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 COPS5Q92905 334 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 NKD2Q969F2 451 aaPredicted RBP13.54□□□□□ -0.24
LDLR-207ENST00000558013 PIWIL1Q96J94 861 aaKnown RBP13.54□□□□□ -0.24
LDLR-207ENST00000558013 SLC17A7Q9P2U7 560 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 CPSF3Q9UKF6 684 aaKnown RBP13.54□□□□□ -0.24
LDLR-207ENST00000558013 ZBTB42B2RXF5 422 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 INO80B-WBP1J3KQ70 363 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 TYROBPO43914 113 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 MAFO75444 373 aaPredicted RBP13.54□□□□□ -0.24
LDLR-207ENST00000558013 GRAP2O75791 330 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 ERBB2P04626 1255 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 SGSM1Q2NKQ1 1148 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 DRICH1Q6PGQ1 229 aaPredicted RBP13.54□□□□□ -0.24
LDLR-207ENST00000558013 CENPUQ71F23 418 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 ZC3H18Q86VM9 953 aaKnown RBP13.54□□□□□ -0.24
LDLR-207ENST00000558013 FBXO36Q8NEA4 188 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 GIMAP7Q8NHV1 300 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 FBF1Q8TES7 1133 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 PYROXD1Q8WU10 500 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 CALN1Q9BXU9 219 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 MRPL4Q9BYD3 311 aaKnown RBP13.54□□□□□ -0.24
LDLR-207ENST00000558013 INO80BQ9C086 356 aaPredicted RBP13.54□□□□□ -0.24
LDLR-207ENST00000558013 TMEM134Q9H6X4 195 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 SMYD3Q9H7B4 428 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 YY1AP1Q9H869 796 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 HOXC10Q9NYD6 342 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 DCTN4Q9UJW0 460 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 FARP1Q9Y4F1 1045 aaPredicted RBP13.54□□□□□ -0.24
LDLR-207ENST00000558013 PHIPQ8WWQ0 1821 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 LCTP09848 1927 aa13.54□□□□□ -0.24
LDLR-207ENST00000558013 STAM2O75886 525 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 UNC5CO95185 931 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 ITGAVP06756 1048 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 MOGSQ13724 837 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 PIGHQ14442 188 aaPredicted RBP13.53□□□□□ -0.24
LDLR-207ENST00000558013 TMEM132AQ24JP5 1023 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 C12orf42Q96LP6 360 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 LBHD1Q9BQE6 289 aaPredicted RBP13.53□□□□□ -0.24
LDLR-207ENST00000558013 NRBP2Q9NSY0 501 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 GGA3Q9NZ52 723 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 DRG1Q9Y295 367 aaKnown RBP13.53□□□□□ -0.24
LDLR-207ENST00000558013 ACTL7BQ9Y614 415 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 EIF4E1BA6NMX2 242 aaKnown RBP13.53□□□□□ -0.24
LDLR-207ENST00000558013 ATP2A1O14983 1001 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 OGTO15294 1046 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 SLC8A1P32418 973 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 ICAM3P32942 547 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 CLCN3P51790 818 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 MCL1Q07820 350 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 SPARCL1Q14515 664 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 RNF43Q68DV7 783 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 OTOAQ7RTW8 1153 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 VSIG1Q86XK7 387 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 UBA3Q8TBC4 463 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 MAGEC3Q8TD91 643 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 KCNV2Q8TDN2 545 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 PTPRN2Q92932 1015 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 PCDH9Q9HC56 1237 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 NPHS2Q9NP85 383 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 SIX4Q9UIU6 781 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 CHMP2BQ9UQN3 213 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 KAT6AQ92794 2004 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 RGPD3A6NKT7 1758 aaPredicted RBP13.53□□□□□ -0.24
LDLR-207ENST00000558013 DIAPH2O60879 1101 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 NFICP08651 508 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 T-ENOLP0DO92 83 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 KDELR1P24390 212 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 ELF1P32519 619 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 BASP1P80723 227 aaKnown RBP13.53□□□□□ -0.24
LDLR-207ENST00000558013 LRRC38Q5VT99 294 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 RGPD4Q7Z3J3 1758 aa13.53□□□□□ -0.24
LDLR-207ENST00000558013 L3MBTL3Q96JM7 780 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms