RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, human

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SLIRP-208	ENST00000556956	EDEM3	Q9BZQ6	932 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	TRIM6	Q9C030	488 aa	Predicted RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	PUS7L	Q9H0K6	701 aa	Known RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	RNF41	Q9H4P4	317 aa	Predicted RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	RABEP2	Q9H5N1	569 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	SH2D4A	Q9H788	454 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CNOT10	Q9H9A5	744 aa	Known RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	SLC52A2	Q9HAB3	445 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	TMBIM4	Q9HC24	238 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	PLCB1	Q9NQ66	1216 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	CATSPERZ	Q9NTU4	200 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	ARHGAP20	Q9P2F6	1191 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	TRIM10	Q9UDY6	481 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	KCNJ14	Q9UNX9	436 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	INVS	Q9Y283	1065 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	PCDHA13	Q9Y5I0	950 aa		3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	FAM208A	Q9UK61	1670 aa	Known RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	PDS5A	Q29RF7	1337 aa	Known RBP	3.13	□□□□□ -1.91
SLIRP-208	ENST00000556956	RTL9	Q8NET4	1388 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	MED1	Q15648	1581 aa	Predicted RBP	3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	MST1R	Q04912	1400 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	ADAMTS13	Q76LX8	1427 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	MACROD2	A1Z1Q3	448 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	C5orf60	A6NFR6	353 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	ZNF233	A6NK53	670 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	WNT9A	O14904	365 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	LIN7A	O14910	233 aa	Predicted RBP	3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	FOXP2	O15409	715 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	PJA2	O43164	708 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	TRAPPC3	O43617	180 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	ORC4	O43929	436 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	AKR1B10	O60218	316 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	MGRN1	O60291	552 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	MOCS3	O95396	460 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	LCA5L	O95447	670 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	TFRC	P02786	760 aa	Known RBP	3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	PAEP	P09466	180 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	TRIM21	P19474	475 aa	Known RBP	3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	RXRA	P19793	462 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	CCNE1	P24864	410 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	CDC25A	P30304	524 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	HNRNPH3	P31942	346 aa	Known RBP	3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	GUCY1A2	P33402	732 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	HSPA9	P38646	679 aa	Known RBP	3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	STAT6	P42226	847 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	PRCP	P42785	496 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	MATR3	P43243	847 aa	Known RBP eCLIP	3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	MTIF2	P46199	727 aa	Known RBP	3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	ATP2C1	P98194	919 aa	Predicted RBP	3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	AMPD3	Q01432	767 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	PFKP	Q01813	784 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	GUCY2D	Q02846	1103 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	ABHD18	Q0P651	414 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	GRIK3	Q13003	919 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	ITGB3BP	Q13352	177 aa	Predicted RBP	3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	XRCC4	Q13426	336 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	RIPK1	Q13546	671 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	CUL1	Q13616	776 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	ITIH4	Q14624	930 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	NAA25	Q14CX7	972 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	PPP2R5A	Q15172	486 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	ZNF174	Q15697	407 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	ZNF568	Q3ZCX4	644 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	CCDC38	Q502W7	563 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	LRRC24	Q50LG9	513 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	ODF2	Q5BJF6	829 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	ANKRD20A8P	Q5CZ79	823 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	SPDYC	Q5MJ68	293 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	TTC38	Q5R3I4	469 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	AKNAD1	Q5T1N1	836 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	GKAP1	Q5VSY0	366 aa	Predicted RBP	3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	ARL6IP4	Q66PJ3	421 aa	Known RBP	3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	HAUS3	Q68CZ6	603 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	TLDC1	Q6P9B6	456 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	WDR59	Q6PJI9	974 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	TMED8	Q6PL24	325 aa	Predicted RBP	3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	ARHGAP36	Q6ZRI8	547 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	SPATC1	Q76KD6	591 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	CPLX4	Q7Z7G2	160 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	CATIP	Q7Z7H3	387 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	TBC1D10C	Q8IV04	446 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	APLF	Q8IW19	511 aa	Predicted RBP	3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	ZC3H7A	Q8IWR0	971 aa	Known RBP	3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	KBTBD2	Q8IY47	623 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	IFNL2	Q8IZJ0	200 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	FUK	Q8N0W3	1084 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	TEX9	Q8N6V9	391 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	AMER2	Q8N7J2	671 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	MAB21L3	Q8N8X9	362 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	DTX3	Q8N9I9	347 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	CCDC63	Q8NA47	563 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	FANCB	Q8NB91	859 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	CCDC197	Q8NCU1	140 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	NUP133	Q8WUM0	1156 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	IFT81	Q8WYA0	676 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	RAPGEF4	Q8WZA2	1011 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	CUL5	Q93034	780 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	LRRC59	Q96AG4	307 aa	Known RBP	3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	HVCN1	Q96D96	273 aa		3.12	□□□□□ -1.91
SLIRP-208	ENST00000556956	RRP36	Q96EU6	259 aa	Known RBP	3.12	□□□□□ -1.91

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