RNA–Protein interactions for RNA: ENST00000556461.1

VTI1B-206, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 576 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-206ENST00000556461 SMARCE1Q969G3 411 aa8.67□□□□□ -1.02
VTI1B-206ENST00000556461 SYAP1Q96A49 352 aaPredicted RBP8.67□□□□□ -1.02
VTI1B-206ENST00000556461 PCED1BQ96HM7 432 aa8.67□□□□□ -1.02
VTI1B-206ENST00000556461 TIGD1Q96MW7 591 aa8.67□□□□□ -1.02
VTI1B-206ENST00000556461 PHOX2BQ99453 314 aa8.67□□□□□ -1.02
VTI1B-206ENST00000556461 SLC46A2Q9BY10 475 aa8.67□□□□□ -1.02
VTI1B-206ENST00000556461 ZFHX2Q9C0A1 2572 aaPredicted RBP8.67□□□□□ -1.02
VTI1B-206ENST00000556461 SMG9Q9H0W8 520 aaKnown RBP8.67□□□□□ -1.02
VTI1B-206ENST00000556461 SNX25Q9H3E2 840 aa8.67□□□□□ -1.02
VTI1B-206ENST00000556461 SLITRK6Q9H5Y7 841 aa8.67□□□□□ -1.02
VTI1B-206ENST00000556461 MMRN2Q9H8L6 949 aa8.67□□□□□ -1.02
VTI1B-206ENST00000556461 VRTNQ9H8Y1 702 aa8.67□□□□□ -1.02
VTI1B-206ENST00000556461 TBC1D17Q9HA65 648 aa8.67□□□□□ -1.02
VTI1B-206ENST00000556461 TRPV4Q9HBA0 871 aa8.67□□□□□ -1.02
VTI1B-206ENST00000556461 APOBEC3GQ9HC16 384 aaKnown RBP8.67□□□□□ -1.02
VTI1B-206ENST00000556461 ZFP14Q9HCL3 533 aa8.67□□□□□ -1.02
VTI1B-206ENST00000556461 HMGXB4Q9UGU5 601 aa8.67□□□□□ -1.02
VTI1B-206ENST00000556461 CDH9Q9ULB4 789 aa8.67□□□□□ -1.02
VTI1B-206ENST00000556461 MAGED2Q9UNF1 606 aaPredicted RBP8.67□□□□□ -1.02
VTI1B-206ENST00000556461 FRMD4BQ9Y2L6 1034 aa8.67□□□□□ -1.02
VTI1B-206ENST00000556461 MTF2Q9Y483 593 aaPredicted RBP8.67□□□□□ -1.02
VTI1B-206ENST00000556461 CLDN5O00501 218 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 MAPK13O15264 365 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 NOL4O94818 638 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 KIF20AO95235 890 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 SMC2O95347 1197 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 DCNP07585 359 aaKnown RBP8.66□□□□□ -1.02
VTI1B-206ENST00000556461 GLULP15104 373 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 PTPN1P18031 435 aaKnown RBP8.66□□□□□ -1.02
VTI1B-206ENST00000556461 CD72P21854 359 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 GDI1P31150 447 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 CLCN5P51795 746 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 AP3M2P53677 418 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 NLRP12P59046 1061 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 MCCD1P59942 119 aaPredicted RBP8.66□□□□□ -1.02
VTI1B-206ENST00000556461 USP46P62068 366 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 CYP27A1Q02318 531 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 NHLH1Q02575 133 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 EDRF1Q3B7T1 1238 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 CFAP221Q4G0U5 840 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 SLC44A4Q53GD3 710 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 TXNDC8Q6A555 127 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 SCN4BQ8IWT1 228 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 ZC3H3Q8IXZ2 948 aaKnown RBP8.66□□□□□ -1.02
VTI1B-206ENST00000556461 RIN3Q8TB24 985 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 MYCBPAPQ8TBZ2 947 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 TAS1R2Q8TE23 839 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 SEMA4DQ92854 862 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 FAM122AQ96E09 287 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 FUBP3Q96I24 572 aaKnown RBP eCLIP8.66□□□□□ -1.02
VTI1B-206ENST00000556461 GSDMAQ96QA5 445 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 B3GNT5Q9BYG0 378 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 ZNF518BQ9C0D4 1074 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 TASP1Q9H6P5 420 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 ABCB6Q9NP58 842 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 HEBP1Q9NRV9 189 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 FAM86C1Q9NVL1 165 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 RMND1Q9NWS8 449 aa8.66□□□□□ -1.02
VTI1B-206ENST00000556461 MAGEC2Q9UBF1 373 aaPredicted RBP8.66□□□□□ -1.02
VTI1B-206ENST00000556461 ARIH1Q9Y4X5 557 aaPredicted RBP8.66□□□□□ -1.02
VTI1B-206ENST00000556461 A8MXQ7 604 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 PPP1R3GB7ZBB8 358 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 ARNTLO00327 626 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 BIN1O00499 593 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 STK25O00506 426 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 IKBKBO14920 756 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 GALR2O43603 387 aaPredicted RBP8.65□□□□□ -1.02
VTI1B-206ENST00000556461 KINO60870 393 aaKnown RBP8.65□□□□□ -1.02
VTI1B-206ENST00000556461 CLSTN1O94985 981 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 ASS1P00966 412 aaKnown RBP8.65□□□□□ -1.02
VTI1B-206ENST00000556461 FAM163BP0C2L3 166 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 CSH1P0DML2 217 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 CSH2P0DML3 217 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 PSMC3P17980 439 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 RPL13P26373 211 aaKnown RBP8.65□□□□□ -1.02
VTI1B-206ENST00000556461 CDC25CP30307 473 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 PSMC2P35998 433 aaKnown RBP8.65□□□□□ -1.02
VTI1B-206ENST00000556461 PIK3CAP42336 1068 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 MAGEA11P43364 429 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 ASPAP45381 313 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 STARD6P59095 220 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 RPL10AP62906 217 aaKnown RBP8.65□□□□□ -1.02
VTI1B-206ENST00000556461 MORC3Q14149 939 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 MLF2Q15773 248 aaPredicted RBP8.65□□□□□ -1.02
VTI1B-206ENST00000556461 TAF12Q16514 161 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 SGSM1Q2NKQ1 1148 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 COBLL1Q53SF7 1204 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 ZNF667Q5HYK9 610 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 PHLDB3Q6NSJ2 640 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 C4orf50Q6ZRC1 276 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 PAQR9Q6ZVX9 377 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 INTS8Q75QN2 995 aaKnown RBP8.65□□□□□ -1.02
VTI1B-206ENST00000556461 MFSD6LQ8IWD5 586 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 ELOA2Q8IYF1 753 aaPredicted RBP8.65□□□□□ -1.02
VTI1B-206ENST00000556461 MAB21L3Q8N8X9 362 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 B3GALNT2Q8NCR0 500 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 CCDC34Q96HJ3 373 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 ZFYVE19Q96K21 471 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 TWNKQ96RR1 684 aa8.65□□□□□ -1.02
VTI1B-206ENST00000556461 SLC22A12Q96S37 553 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms