RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 MXI1P50539 228 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 FAM78AQ5JUQ0 283 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 C1orf220Q5T0J3 134 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 B3GALNT2Q8NCR0 500 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 ZSCAN18Q8TBC5 510 aaPredicted RBP22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 GIPC2Q8TF65 315 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 TRMT2BQ96GJ1 504 aaKnown RBP22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 SHDQ96IW2 340 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 CEP63Q96MT8 703 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 ELOVL4Q9GZR5 314 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 METTL14Q9HCE5 456 aaKnown RBP22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 ZNF334Q9HCZ1 680 aaPredicted RBP22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 CRTAC1Q9NQ79 661 aa22.02■■□□□ 1.12
CCDC88C-210ENST00000555995 OBSL1O75147 1896 aa22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 PTPN1P18031 435 aaKnown RBP22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 WEE1P30291 646 aa22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 CLCN5P51795 746 aa22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 NOP14P78316 857 aaKnown RBP22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 CYP27A1Q02318 531 aa22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 MORC3Q14149 939 aa22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 MDH1BQ5I0G3 518 aa22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 ANKRD40Q6AI12 368 aa22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 GAREM2Q75VX8 874 aa22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 UNC93AQ86WB7 457 aa22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 SIX5Q8N196 739 aa22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 TTC39CQ8N584 583 aa22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 GPR152Q8TDT2 470 aa22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 DNASE1L2Q92874 299 aa22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 SPATA17Q96L03 361 aa22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 FAM124BQ9H5Z6 455 aaPredicted RBP22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 SMYD3Q9H7B4 428 aa22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 ARHGEF3Q9NR81 526 aa22.01■■□□□ 1.11
CCDC88C-210ENST00000555995 HCRTO43612 131 aa22■■□□□ 1.11
CCDC88C-210ENST00000555995 NOL4O94818 638 aa22■■□□□ 1.11
CCDC88C-210ENST00000555995 FCARP24071 287 aa22■■□□□ 1.11
CCDC88C-210ENST00000555995 PPP3CAQ08209 521 aa22■■□□□ 1.11
CCDC88C-210ENST00000555995 TCERG1LQ5VWI1 586 aa22■■□□□ 1.11
CCDC88C-210ENST00000555995 ASTLQ6HA08 431 aaPredicted RBP22■■□□□ 1.11
CCDC88C-210ENST00000555995 SCARA5Q6ZMJ2 495 aa22■■□□□ 1.11
CCDC88C-210ENST00000555995 CLEC17AQ6ZS10 378 aa22■■□□□ 1.11
CCDC88C-210ENST00000555995 SCN4BQ8IWT1 228 aa22■■□□□ 1.11
CCDC88C-210ENST00000555995 MRPS31Q92665 395 aaKnown RBP22■■□□□ 1.11
CCDC88C-210ENST00000555995 PCED1BQ96HM7 432 aa22■■□□□ 1.11
CCDC88C-210ENST00000555995 NIF3L1Q9GZT8 377 aa22■■□□□ 1.11
CCDC88C-210ENST00000555995 TASP1Q9H6P5 420 aa22■■□□□ 1.11
CCDC88C-210ENST00000555995 CYP3A43Q9HB55 503 aa22■■□□□ 1.11
CCDC88C-210ENST00000555995 OBP2AQ9NY56 170 aa22■■□□□ 1.11
CCDC88C-210ENST00000555995 ARMCX3Q9UH62 379 aaPredicted RBP22■■□□□ 1.11
CCDC88C-210ENST00000555995 DPYSL4O14531 572 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 ATP2C2O75185 946 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 GJA1P17302 382 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 PSMC3P17980 439 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 GRIK1P39086 918 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 PRKCQQ04759 706 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 DDR2Q16832 855 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 GPR158Q5T848 1215 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 TANGO2Q6ICL3 276 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 PHLDB3Q6NSJ2 640 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 FBXL13Q8NEE6 735 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 IRF7Q92985 503 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 MYRFLQ96LU7 910 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 GBP4Q96PP9 640 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 RPP25Q9BUL9 199 aaKnown RBP21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 TRMT61BQ9BVS5 477 aaKnown RBP21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 MMRN2Q9H8L6 949 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 IL21Q9HBE4 155 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 KIAA1468Q9P260 1216 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 MAGED2Q9UNF1 606 aaPredicted RBP21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 GREB1Q4ZG55 1949 aa21.99■■□□□ 1.11
CCDC88C-210ENST00000555995 ZDBF2Q9HCK1 2354 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 TRIM49BA6NDI0 452 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 SLC38A8A6NNN8 435 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 HMGA1P17096 107 aaKnown RBP21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 BDNFP23560 247 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 AVPR2P30518 371 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 NLRP12P59046 1061 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 GPC5P78333 572 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 DCAF17Q5H9S7 520 aaPredicted RBP21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 WDR44Q5JSH3 913 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 KLHL10Q6JEL2 608 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 FILIP1Q7Z7B0 1213 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 MFSD6LQ8IWD5 586 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 YAF2Q8IY57 180 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 FLCNQ8NFG4 579 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 TAS1R2Q8TE23 839 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 NELFBQ8WX92 580 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 C8orf48Q96LL4 319 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 BCO2Q9BYV7 579 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 CA14Q9ULX7 337 aa21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 ZNF638Q14966 1978 aaKnown RBP21.98■■□□□ 1.11
CCDC88C-210ENST00000555995 FGFR1OPO95684 399 aaKnown RBP21.97■■□□□ 1.11
CCDC88C-210ENST00000555995 GNA14O95837 355 aa21.97■■□□□ 1.11
CCDC88C-210ENST00000555995 PDGFBP01127 241 aaPredicted RBP21.97■■□□□ 1.11
CCDC88C-210ENST00000555995 AOC1P19801 751 aa21.97■■□□□ 1.11
CCDC88C-210ENST00000555995 AVPR1AP37288 418 aa21.97■■□□□ 1.11
CCDC88C-210ENST00000555995 ASPAP45381 313 aa21.97■■□□□ 1.11
CCDC88C-210ENST00000555995 GPR15P49685 360 aa21.97■■□□□ 1.11
CCDC88C-210ENST00000555995 PDE6CP51160 858 aa21.97■■□□□ 1.11
CCDC88C-210ENST00000555995 CDR1P51861 262 aa21.97■■□□□ 1.11
CCDC88C-210ENST00000555995 PMS1P54277 932 aaKnown RBP21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms