RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	ARHGAP17	Q68EM7	881 aa		13.28	□□□□□ -0.28
ABCD4-223	ENST00000555904	FAM171B	Q6P995	826 aa		13.28	□□□□□ -0.28
ABCD4-223	ENST00000555904	RSPO2	Q6UXX9	243 aa	Predicted RBP	13.28	□□□□□ -0.28
ABCD4-223	ENST00000555904	PALB2	Q86YC2	1186 aa		13.28	□□□□□ -0.28
ABCD4-223	ENST00000555904	EPS8L1	Q8TE68	723 aa		13.28	□□□□□ -0.28
ABCD4-223	ENST00000555904	SMARCD1	Q96GM5	515 aa		13.28	□□□□□ -0.28
ABCD4-223	ENST00000555904	FAM161B	Q96MY7	647 aa		13.28	□□□□□ -0.28
ABCD4-223	ENST00000555904	CDCA3	Q99618	268 aa	Predicted RBP	13.28	□□□□□ -0.28
ABCD4-223	ENST00000555904	NSUN3	Q9H649	340 aa	Known RBP	13.28	□□□□□ -0.28
ABCD4-223	ENST00000555904	KRT82	Q9NSB4	513 aa		13.28	□□□□□ -0.28
ABCD4-223	ENST00000555904	AFF4	Q9UHB7	1163 aa	Known RBP	13.28	□□□□□ -0.28
ABCD4-223	ENST00000555904	NME7	Q9Y5B8	376 aa		13.28	□□□□□ -0.28
ABCD4-223	ENST00000555904	PCDHGC5	Q9Y5F6	944 aa		13.28	□□□□□ -0.28
ABCD4-223	ENST00000555904	MTMR11	A4FU01	709 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904		M0QYV0	167 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904		O00370	1275 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	ADAM12	O43184	909 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	C1R	P00736	705 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	SERPING1	P05155	500 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	ATF2	P15336	505 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	IGFBP4	P22692	258 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	ANXA13	P27216	316 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	TUFM	P49411	452 aa	Known RBP	13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	BCAT1	P54687	386 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	ADCY1	Q08828	1119 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	MGAT5B	Q3V5L5	792 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	CFAP221	Q4G0U5	840 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	VSTM1	Q6UX27	236 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	RNF19B	Q6ZMZ0	732 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	CCDC149	Q6ZUS6	474 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	RBM23	Q86U06	439 aa	Known RBP	13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	FAM35A	Q86V20	835 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	LRRTM3	Q86VH5	581 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	GPIHBP1	Q8IV16	184 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	ZNF606	Q8WXB4	792 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	PANX2	Q96RD6	677 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	PKMYT1	Q99640	499 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	SEPT5	Q99719	369 aa	Predicted RBP	13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	HNRNPAB	Q99729	332 aa	Known RBP	13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	DEF6	Q9H4E7	631 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	CYP4F11	Q9HBI6	524 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	SEPT11	Q9NVA2	429 aa	Known RBP	13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	HSFX1	Q9UBD0	423 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	TSPAN16	Q9UKR8	245 aa		13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	13.27	□□□□□ -0.29
ABCD4-223	ENST00000555904	CHD9	Q3L8U1	2897 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	LAMA3	Q16787	3333 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	TRIM66	O15016	1216 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	TGM5	O43548	720 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	AP1G2	O75843	785 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	ABLIM3	O94929	683 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	SETSIP	P0DME0	302 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	BDNF	P23560	247 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	HNRNPH3	P31942	346 aa	Known RBP	13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	GRIK1	P39086	918 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	PRKCI	P41743	596 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	NRIP1	P48552	1158 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	CLCN4	P51793	760 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	RPL10A	P62906	217 aa	Known RBP	13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	CDR2	Q01850	454 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	CCDC173	Q0VFZ6	552 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	PLD1	Q13393	1074 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	CNGA2	Q16280	664 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	MEA1	Q16626	185 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	TAF3	Q5VWG9	929 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	LCLAT1	Q6UWP7	414 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	TRIM72	Q6ZMU5	477 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	IRF2BP2	Q7Z5L9	587 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	NOP9	Q86U38	636 aa	Known RBP	13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	FUK	Q8N0W3	1084 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	TC2N	Q8N9U0	490 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	TFAP2B	Q92481	460 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	NOX5	Q96PH1	765 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	LPIN3	Q9BQK8	851 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	B3GNT5	Q9BYG0	378 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	ZNF518B	Q9C0D4	1074 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	DMAP1	Q9NPF5	467 aa	Predicted RBP	13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	ACP6	Q9NPH0	428 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	TMLHE	Q9NVH6	421 aa		13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	NOCT	Q9UK39	431 aa	Known RBP	13.26	□□□□□ -0.29
ABCD4-223	ENST00000555904	CLDN5	O00501	218 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	PER2	O15055	1255 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	CLASP2	O75122	1294 aa	Known RBP	13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	MICAL2	O94851	1124 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	LSM8	O95777	96 aa	Known RBP	13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	MME	P08473	750 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	NPR3	P17342	541 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	MAGEA11	P43364	429 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	ALDH1A3	P47895	512 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	CDR1	P51861	262 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	GOLGA8F	Q08AF8	430 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	GOLGA8DP	Q0D2H9	430 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	BST2	Q10589	180 aa	Known RBP	13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	DUSP4	Q13115	394 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	ARID5B	Q14865	1188 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	VEPH1	Q14D04	833 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	DUSP6	Q16828	381 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	CCDC142	Q17RM4	750 aa		13.25	□□□□□ -0.29
ABCD4-223	ENST00000555904	RTL10	Q7L3V2	364 aa		13.25	□□□□□ -0.29

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