RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 TMLHEQ9NVH6 421 aa13.23□□□□□ -0.29
SHMT2-221ENST00000555773 HESX1Q9UBX0 185 aa13.23□□□□□ -0.29
SHMT2-221ENST00000555773 DPP7Q9UHL4 492 aa13.23□□□□□ -0.29
SHMT2-221ENST00000555773 NOCTQ9UK39 431 aaKnown RBP13.23□□□□□ -0.29
SHMT2-221ENST00000555773 PCDHGC3Q9UN70 934 aa13.23□□□□□ -0.29
SHMT2-221ENST00000555773 WDR27A2RRH5 827 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 OR4Q2P0C623 313 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 BRD2P25440 801 aaKnown RBP13.22□□□□□ -0.29
SHMT2-221ENST00000555773 ELF1P32519 619 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 MAGEA11P43364 429 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 TUFMP49411 452 aaKnown RBP13.22□□□□□ -0.29
SHMT2-221ENST00000555773 SLC8A3P57103 927 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 CYP27A1Q02318 531 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 CCDC173Q0VFZ6 552 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 GRIN2CQ14957 1233 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 HABP4Q5JVS0 413 aaKnown RBP13.22□□□□□ -0.29
SHMT2-221ENST00000555773 HGSNATQ68CP4 663 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 RNF19BQ6ZMZ0 732 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 PAQR9Q6ZVX9 377 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 CCDC186Q7Z3E2 898 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 NOP9Q86U38 636 aaKnown RBP13.22□□□□□ -0.29
SHMT2-221ENST00000555773 VPS36Q86VN1 386 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 SLC2A14Q8TDB8 520 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 HDAC7Q8WUI4 952 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 MYLPFQ96A32 169 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 AGPAT1Q99943 283 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 LPIN3Q9BQK8 851 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 ZSWIM1Q9BR11 485 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 MED10Q9BTT4 135 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 UBXN6Q9BZV1 441 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 LHX5Q9H2C1 402 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 PDCL3Q9H2J4 239 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 PRDM12Q9H4Q4 367 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 HAUS4Q9H6D7 363 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 TLE6Q9H808 572 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 ACP6Q9NPH0 428 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 FAM49BQ9NUQ9 324 aa13.22□□□□□ -0.29
SHMT2-221ENST00000555773 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.22□□□□□ -0.29
SHMT2-221ENST00000555773 SSU72P8A0A1W2PR75 194 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 MTMR11A4FU01 709 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 TGM5O43548 720 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 CLASP2O75122 1294 aaKnown RBP13.21□□□□□ -0.29
SHMT2-221ENST00000555773 GLUD1P00367 558 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 FAM200BP0CF97 657 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 SKILP12757 684 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 CCDC130P13994 396 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 TNFAIP3P21580 790 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 ADCY1Q08828 1119 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 GOLGA8FQ08AF8 430 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 GOLGA8DPQ0D2H9 430 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 E4F1Q66K89 784 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-221ENST00000555773 ELMSAN1Q6PJG2 1045 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 WDR59Q6PJI9 974 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 TRIM72Q6ZMU5 477 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 PALB2Q86YC2 1186 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 TMTC1Q8IUR5 882 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 TCEAL8Q8IYN2 117 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 ATAD1Q8NBU5 361 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 SMARCD1Q96GM5 515 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 LRCH3Q96II8 777 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 CEP295NLQ96MC4 621 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 PPP1R9BQ96SB3 815 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 DUSP16Q9BY84 665 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 ZNF518BQ9C0D4 1074 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 PLEKHA4Q9H4M7 779 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 NSUN3Q9H649 340 aaKnown RBP13.21□□□□□ -0.29
SHMT2-221ENST00000555773 TSPAN16Q9UKR8 245 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 CEP83Q9Y592 693 aa13.21□□□□□ -0.29
SHMT2-221ENST00000555773 CHD9Q3L8U1 2897 aa13.21□□□□□ -0.3
SHMT2-221ENST00000555773 CLDN5O00501 218 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 AP1G2O75843 785 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 MICAL2O94851 1124 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 LSM8O95777 96 aaKnown RBP13.2□□□□□ -0.3
SHMT2-221ENST00000555773 SETSIPP0DME0 302 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 HAPLN1P10915 354 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-221ENST00000555773 NPR3P17342 541 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 CHRNB2P17787 502 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 FECHP22830 423 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 BDNFP23560 247 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 ADORA2BP29275 332 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 CLCN4P51793 760 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 BCAT1P54687 386 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 RPL10AP62906 217 aaKnown RBP13.2□□□□□ -0.3
SHMT2-221ENST00000555773 DUSP4Q13115 394 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 MAPK8IP2Q13387 824 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-221ENST00000555773 DUSP6Q16828 381 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 GOLGA7BQ2TAP0 167 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 PKDCCQ504Y2 493 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 TDRD12Q587J7 1177 aaKnown RBP13.2□□□□□ -0.3
SHMT2-221ENST00000555773 PPP1R2P3Q6NXS1 205 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 CYP26C1Q6V0L0 522 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 CCDC149Q6ZUS6 474 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 ZNF571Q7Z3V5 609 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-221ENST00000555773 FAM35AQ86V20 835 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 GLYCTKQ8IVS8 523 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 CCDC170Q8IYT3 715 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 TMEM35BQ8NCS4 154 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 STK32AQ8WU08 396 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 SLC22A17Q8WUG5 538 aa13.2□□□□□ -0.3
SHMT2-221ENST00000555773 C8orf48Q96LL4 319 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms