RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 LMO2P25791 158 aa17.15■□□□□ 0.34
CCDC88C-209ENST00000554872 RPL13P26373 211 aaKnown RBP17.15■□□□□ 0.34
CCDC88C-209ENST00000554872 NLRP12P59046 1061 aa17.15■□□□□ 0.34
CCDC88C-209ENST00000554872 NCOA4Q13772 614 aa17.15■□□□□ 0.34
CCDC88C-209ENST00000554872 C1orf220Q5T0J3 134 aa17.15■□□□□ 0.34
CCDC88C-209ENST00000554872 GPR158Q5T848 1215 aa17.15■□□□□ 0.34
CCDC88C-209ENST00000554872 ARID3BQ8IVW6 561 aaPredicted RBP17.15■□□□□ 0.34
CCDC88C-209ENST00000554872 DTWD2Q8NBA8 298 aa17.15■□□□□ 0.34
CCDC88C-209ENST00000554872 MMS19Q96T76 1030 aa17.15■□□□□ 0.34
CCDC88C-209ENST00000554872 NELL2Q99435 816 aa17.15■□□□□ 0.34
CCDC88C-209ENST00000554872 MRPL45Q9BRJ2 306 aaKnown RBP17.15■□□□□ 0.34
CCDC88C-209ENST00000554872 BRD9Q9H8M2 597 aa17.15■□□□□ 0.34
CCDC88C-209ENST00000554872 KIF26AQ9ULI4 1882 aaPredicted RBP17.15■□□□□ 0.34
CCDC88C-209ENST00000554872 DENND4CQ5VZ89 1909 aa17.15■□□□□ 0.34
CCDC88C-209ENST00000554872 HEPACAM2A8MVW5 462 aa17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 TULP1O00294 542 aaPredicted RBP17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 CHADO15335 359 aa17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 HCRTO43612 131 aa17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 PHACTR2O75167 634 aa17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 AKAP3O75969 853 aa17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 VNN1O95497 513 aa17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 RFX1P22670 979 aa17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 GNL1P36915 607 aaPredicted RBP17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 BIRC3Q13489 604 aa17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 TAF12Q16514 161 aa17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 STXBP5Q5T5C0 1151 aa17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 C1orf228Q6PIY5 440 aa17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 GIPC2Q8TF65 315 aa17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 MYLPFQ96A32 169 aa17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 RSPRY1Q96DX4 576 aa17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 SNX25Q9H3E2 840 aa17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 HOOK1Q9UJC3 728 aaKnown RBP17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 NME7Q9Y5B8 376 aa17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 OBSL1O75147 1896 aa17.14■□□□□ 0.33
CCDC88C-209ENST00000554872 SHISA7A6NL88 538 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 PROB1E7EW31 1015 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 MAN2B1O00754 1011 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 ATP2C2O75185 946 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 SMC2O95347 1197 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 ASS1P00966 412 aaKnown RBP17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 P4HA1P13674 534 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 GTF2H1P32780 548 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 PSMC2P35998 433 aaKnown RBP17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 VIPR2P41587 438 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 VAMP7P51809 220 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 PSMC1P62191 440 aaKnown RBP17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 DLG4P78352 724 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 PNOCQ13519 176 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 GRM2Q14416 872 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 ZNF268Q14587 947 aaPredicted RBP17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 CCDC142Q17RM4 750 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 SGSM1Q2NKQ1 1148 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 ZNF699Q32M78 642 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 ZNF667Q5HYK9 610 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 ZNF658Q5TYW1 1059 aaPredicted RBP17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 CEP135Q66GS9 1140 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 SV2AQ7L0J3 742 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 ZC3H3Q8IXZ2 948 aaKnown RBP17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 CMTM8Q8IZV2 173 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 ZNF687Q8N1G0 1237 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 CLDN23Q96B33 292 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 PCED1BQ96HM7 432 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 FAXDC2Q96IV6 333 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 TTLL2Q9BWV7 592 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 KIF9Q9HAQ2 790 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 LTB4R2Q9NPC1 389 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 EHD2Q9NZN4 543 aa17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 MAGEC2Q9UBF1 373 aaPredicted RBP17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 MRPS17Q9Y2R5 130 aaKnown RBP17.13■□□□□ 0.33
CCDC88C-209ENST00000554872 SLC38A8A6NNN8 435 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 ZNF263O14978 683 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 TRIM66O15016 1216 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 TADA3O75528 432 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 PFKLP17858 780 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 GDI1P31150 447 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 NBL1P41271 181 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 RPS9P46781 194 aaKnown RBP17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 GPR15P49685 360 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 NOP14P78316 857 aaKnown RBP17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 PLCB2Q00722 1185 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 DDR2Q16832 855 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 ARHGAP29Q52LW3 1261 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 ZNF852Q6ZMS4 543 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 TPRG1Q6ZUI0 275 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 MON1AQ86VX9 555 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 FAM186BQ8IYM0 893 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 B3GALNT2Q8NCR0 500 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 MRPS31Q92665 395 aaKnown RBP17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 C8orf48Q96LL4 319 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 IER2Q9BTL4 223 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 SLC46A2Q9BY10 475 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 FOXQ1Q9C009 403 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 ELOVL4Q9GZR5 314 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 HEBP1Q9NRV9 189 aa17.12■□□□□ 0.33
CCDC88C-209ENST00000554872 GREB1Q4ZG55 1949 aa17.11■□□□□ 0.33
CCDC88C-209ENST00000554872 MIA3Q5JRA6 1907 aa17.11■□□□□ 0.33
CCDC88C-209ENST00000554872 STK25O00506 426 aa17.11■□□□□ 0.33
CCDC88C-209ENST00000554872 PRAMEF12O95522 483 aa17.11■□□□□ 0.33
CCDC88C-209ENST00000554872 PTPN1P18031 435 aaKnown RBP17.11■□□□□ 0.33
CCDC88C-209ENST00000554872 CYP4F8P98187 520 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms