RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 TPM1P09493 284 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 DLATP10515 647 aaKnown RBP13.3□□□□□ -0.28
SHMT2-214ENST00000554604 TNNI1P19237 187 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 FECHP22830 423 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 TUFMP49411 452 aaKnown RBP13.3□□□□□ -0.28
SHMT2-214ENST00000554604 NUBP1P53384 320 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 GPC5P78333 572 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 TSPY1Q01534 308 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 NHLH1Q02575 133 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 SMARCB1Q12824 385 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 TAF12Q16514 161 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 KNOP1Q1ED39 458 aaKnown RBP13.3□□□□□ -0.28
SHMT2-214ENST00000554604 PRSS36Q5K4E3 855 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 ITIH5Q86UX2 942 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 CNGA4Q8IV77 575 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 DCP1BQ8IZD4 617 aaKnown RBP13.3□□□□□ -0.28
SHMT2-214ENST00000554604 TMEM105Q8N8V8 129 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 XXYLT1Q8NBI6 393 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 PRSS33Q8NF86 280 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 MYRIPQ8NFW9 859 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 BORCS6Q96GS4 357 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 C16orf45Q96MC5 204 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-214ENST00000554604 SEPT5Q99719 369 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-214ENST00000554604 RTP3Q9BQQ7 232 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 ZCWPW1Q9H0M4 648 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 CRISPLD1Q9H336 500 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 ARHGEF3Q9NR81 526 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 SLC2A4RGQ9NR83 387 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 CGNQ9P2M7 1197 aaKnown RBP13.3□□□□□ -0.28
SHMT2-214ENST00000554604 HSFX1Q9UBD0 423 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 ASB3Q9Y575 518 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 PAXBP1Q9Y5B6 917 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 SNX9Q9Y5X1 595 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 DENND4CQ5VZ89 1909 aa13.3□□□□□ -0.28
SHMT2-214ENST00000554604 KRBA1A5PL33 1030 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 ZSCAN12O43309 604 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 MFAP3LO75121 409 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 ECI2O75521 394 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 SOAT2O75908 522 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 KIF20AO95235 890 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 AOC1P19801 751 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 CCR2P41597 374 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 EPHA5P54756 1037 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 MYL7Q01449 175 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 PFKPQ01813 784 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 VEPH1Q14D04 833 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 BMT2Q1RMZ1 405 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 MGAT5BQ3V5L5 792 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 CWF19L1Q69YN2 538 aaKnown RBP13.29□□□□□ -0.28
SHMT2-214ENST00000554604 SCARA3Q6AZY7 606 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 WDR49Q8IV35 697 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 TMEM86AQ8N2M4 240 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 PDCL2Q8N4E4 241 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 TTC9BQ8N6N2 239 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 OR5B17Q8NGF7 314 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 GOLGA5Q8TBA6 731 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 SPPL2BQ8TCT7 592 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 C2orf15Q8WU43 125 aaKnown RBP13.29□□□□□ -0.28
SHMT2-214ENST00000554604 CCDC127Q96BQ5 260 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 HPDLQ96IR7 371 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 SHDQ96IW2 340 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 PPP1R13BQ96KQ4 1090 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 CNOT6LQ96LI5 555 aaKnown RBP13.29□□□□□ -0.28
SHMT2-214ENST00000554604 TSG101Q99816 390 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 IRF2BPLQ9H1B7 796 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 TBC1D17Q9HA65 648 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 ZFP14Q9HCL3 533 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 ABI2Q9NYB9 513 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-214ENST00000554604 SIX4Q9UIU6 781 aa13.29□□□□□ -0.28
SHMT2-214ENST00000554604 CACNA1IQ9P0X4 2223 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 GOLGA6L9A6NEM1 432 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 GALR2O43603 387 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-214ENST00000554604 EXOC3O60645 756 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 FGF19O95750 216 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 GYPCP04921 128 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 GJA1P17302 382 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 NPR3P17342 541 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 ADKP55263 362 aaKnown RBP13.28□□□□□ -0.28
SHMT2-214ENST00000554604 UBXN1Q04323 297 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 CYP24A1Q07973 514 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 GOLGA8FQ08AF8 430 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 GOLGA8DPQ0D2H9 430 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 NFE2Q16621 373 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-214ENST00000554604 FAM78AQ5JUQ0 283 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 CEP135Q66GS9 1140 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 TANGO2Q6ICL3 276 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 DNAJB7Q7Z6W7 309 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-214ENST00000554604 LRRTM3Q86VH5 581 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 PSMG2Q969U7 264 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 ELSPBP1Q96BH3 223 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 TUBGCP2Q9BSJ2 902 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 GPR88Q9GZN0 384 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 GDAP2Q9NXN4 497 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 DDX43Q9NXZ2 648 aaKnown RBP13.28□□□□□ -0.28
SHMT2-214ENST00000554604 L1RE1Q9UN81 338 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 PCDHB5Q9Y5E4 795 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 MYH10P35580 1976 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 PTPRJQ12913 1337 aa13.28□□□□□ -0.28
SHMT2-214ENST00000554604 NUP210Q8TEM1 1887 aaPredicted RBP13.27□□□□□ -0.28
SHMT2-214ENST00000554604 TICRRQ7Z2Z1 1910 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms