RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 F11P03951 625 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 DLATP10515 647 aaKnown RBP13.66□□□□□ -0.22
LINC00643-202ENST00000553426 HMGA1P17096 107 aaKnown RBP13.66□□□□□ -0.22
LINC00643-202ENST00000553426 SOX9P48436 509 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 DDR2Q16832 855 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 SOWAHAQ2M3V2 549 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 TXNDC8Q6A555 127 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 SHC4Q6S5L8 630 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 MON1AQ86VX9 555 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 SCN4BQ8IWT1 228 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 CEP57L1Q8IYX8 460 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 XXYLT1Q8NBI6 393 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 RDH13Q8NBN7 331 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 GLIS3Q8NEA6 775 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 CXorf38Q8TB03 319 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 LRRC3BQ96PB8 259 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 SYT15Q9BQS2 421 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 SMG9Q9H0W8 520 aaKnown RBP13.66□□□□□ -0.22
LINC00643-202ENST00000553426 EPC1Q9H2F5 836 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 GKN1Q9NS71 199 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 TDP1Q9NUW8 608 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 MAGEC2Q9UBF1 373 aaPredicted RBP13.66□□□□□ -0.22
LINC00643-202ENST00000553426 GMEB2Q9UKD1 530 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 CDH9Q9ULB4 789 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 SMG5Q9UPR3 1016 aaKnown RBP13.66□□□□□ -0.22
LINC00643-202ENST00000553426 FANCMQ8IYD8 2048 aa13.66□□□□□ -0.22
LINC00643-202ENST00000553426 PVALEFA0A1B0GWK0 134 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 ANXA13P27216 316 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 GRIK1P39086 918 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 MAGEA11P43364 429 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 GPR15P49685 360 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 PDE6CP51160 858 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 CYP2J2P51589 502 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 TNK2Q07912 1038 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 TRPC3Q13507 836 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 RUNX3Q13761 415 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 ZNF268Q14587 947 aaPredicted RBP13.65□□□□□ -0.22
LINC00643-202ENST00000553426 PON2Q15165 354 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 SDHAF4Q5VUM1 108 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 EPM2AIP1Q7L775 607 aaPredicted RBP13.65□□□□□ -0.22
LINC00643-202ENST00000553426 TRAPPC11Q7Z392 1133 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 OSTM1Q86WC4 334 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 NELFCDQ8IXH7 590 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 DCLK2Q8N568 766 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 OR5B17Q8NGF7 314 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 GOLGA5Q8TBA6 731 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 USP13Q92995 863 aaPredicted RBP13.65□□□□□ -0.22
LINC00643-202ENST00000553426 CCDC127Q96BQ5 260 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 RMDN1Q96DB5 314 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 TRMT2BQ96GJ1 504 aaKnown RBP13.65□□□□□ -0.22
LINC00643-202ENST00000553426 FAM84AQ96KN4 292 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 MYRFLQ96LU7 910 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 SNX25Q9H3E2 840 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 TRPC7Q9HCX4 862 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 AGPAT3Q9NRZ7 376 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 EHD2Q9NZN4 543 aa13.65□□□□□ -0.22
LINC00643-202ENST00000553426 NUP210Q8TEM1 1887 aaPredicted RBP13.65□□□□□ -0.22
LINC00643-202ENST00000553426 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.64□□□□□ -0.23
LINC00643-202ENST00000553426 TRAV19A0A0A6YYK7 116 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 CLIC2O15247 247 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 NOL4O94818 638 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 CLSTN1O94985 981 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 CKMP06732 381 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 USP17L7P0C7H9 530 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 SDHBP21912 280 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 HOXD13P35453 343 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 AFMP43652 599 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 TNNC1P63316 161 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 SATB1Q01826 763 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 FAM160A1Q05DH4 1040 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 GRSF1Q12849 480 aaKnown RBP eCLIP13.64□□□□□ -0.23
LINC00643-202ENST00000553426 PDGFRLQ15198 375 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 FAM171BQ6P995 826 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 TXNDC11Q6PKC3 985 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 VSTM1Q6UX27 236 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 TMEM150AQ86TG1 271 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 SCFD1Q8WVM8 642 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 CEP295NLQ96MC4 621 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 FAM83CQ9BQN1 747 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 BLZF1Q9H2G9 400 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 SLC39A2Q9NP94 309 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 RBM12Q9NTZ6 932 aaKnown RBP13.64□□□□□ -0.23
LINC00643-202ENST00000553426 PCDHA7Q9UN72 937 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 COL4A2P08572 1712 aa13.64□□□□□ -0.23
LINC00643-202ENST00000553426 OTOGLQ3ZCN5 2332 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 TGFB1I1O43294 461 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 EXOC3O60645 756 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 ATG13O75143 517 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 PHACTR2O75167 634 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 PAPSS2O95340 614 aaPredicted RBP13.63□□□□□ -0.23
LINC00643-202ENST00000553426 PDGFRBP09619 1106 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 FAM163BP0C2L3 166 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 TDGF1P13385 188 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 WARSP23381 471 aaKnown RBP13.63□□□□□ -0.23
LINC00643-202ENST00000553426 CNR2P34972 360 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 GNL1P36915 607 aaPredicted RBP13.63□□□□□ -0.23
LINC00643-202ENST00000553426 PSMC1P62191 440 aaKnown RBP13.63□□□□□ -0.23
LINC00643-202ENST00000553426 CYP27A1Q02318 531 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 CYP24A1Q07973 514 aa13.63□□□□□ -0.23
LINC00643-202ENST00000553426 CCINQ13939 588 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms