RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 SLC23A3Q6PIS1 610 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 LPCAT2Q7L5N7 544 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 EFCAB13Q8IY85 973 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 SNX29Q8TEQ0 813 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 HNRNPLLQ8WVV9 542 aaKnown RBP13.97□□□□□ -0.17
VPS29-211ENST00000553128 ATP2A3Q93084 1043 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 DRC1Q96MC2 740 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 CAMK1GQ96NX5 476 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 NTPCRQ9BSD7 190 aaKnown RBP13.97□□□□□ -0.17
VPS29-211ENST00000553128 GTPBP2Q9BX10 602 aaKnown RBP13.97□□□□□ -0.17
VPS29-211ENST00000553128 TRPC7Q9HCX4 862 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 ZDHHC4Q9NPG8 344 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 ZMYM5Q9UJ78 669 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 MMP17Q9ULZ9 603 aa13.97□□□□□ -0.17
VPS29-211ENST00000553128 ADAMTS9Q9P2N4 1935 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 H0Y626 953 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 PIRO00625 290 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 TRIM16O95361 564 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 CFIP05156 583 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 NFICP08651 508 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 CDC25AP30304 524 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 IFNAR2P48551 515 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 FXR2P51116 673 aaKnown RBP eCLIP13.96□□□□□ -0.17
VPS29-211ENST00000553128 FAM160A1Q05DH4 1040 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 WSCD1Q658N2 575 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 ZPBP2Q6X784 338 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 CENPQQ7L2Z9 268 aaPredicted RBP13.96□□□□□ -0.17
VPS29-211ENST00000553128 DEFB119Q8N690 84 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 PNPLA1Q8N8W4 532 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 MDM1Q8TC05 714 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 SPPL2BQ8TCT7 592 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 LRRC15Q8TF66 581 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 MRPS31Q92665 395 aaKnown RBP13.96□□□□□ -0.17
VPS29-211ENST00000553128 GTF3C6Q969F1 213 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 FAM212AQ96EL1 285 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 PI4K2AQ9BTU6 479 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 PILRBQ9UKJ0 227 aa13.96□□□□□ -0.17
VPS29-211ENST00000553128 ZNF638Q14966 1978 aaKnown RBP13.96□□□□□ -0.18
VPS29-211ENST00000553128 ANO9A1A5B4 782 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 SGK1O00141 431 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 CYB561D2O14569 222 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 MAP3K13O43283 966 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 ADRB2P07550 413 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 CD59P13987 128 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 ZXDBP98169 803 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 SAFBQ15424 915 aaKnown RBP eCLIP13.95□□□□□ -0.18
VPS29-211ENST00000553128 DDR2Q16832 855 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 CCDC142Q17RM4 750 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 MAP7D1Q3KQU3 841 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 EMC10Q5UCC4 262 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 PEAR1Q5VY43 1037 aaPredicted RBP13.95□□□□□ -0.18
VPS29-211ENST00000553128 LYSMD4Q5XG99 296 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 ALLCQ8N6M5 410 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 ARL14EPQ8N8R7 260 aaPredicted RBP13.95□□□□□ -0.18
VPS29-211ENST00000553128 TXNDC5Q8NBS9 432 aaKnown RBP13.95□□□□□ -0.18
VPS29-211ENST00000553128 SH3RF2Q8TEC5 729 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 SPIRE2Q8WWL2 714 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 EXOC4Q96A65 974 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 DNM3Q9UQ16 869 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 HELZ2Q9BYK8 2649 aaKnown RBP13.95□□□□□ -0.18
VPS29-211ENST00000553128 GON4LQ3T8J9 2241 aa13.95□□□□□ -0.18
VPS29-211ENST00000553128 NPHP3-ACAD11A0A0J9YXS1 232 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 C2orf78A6NCI8 922 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 XPOTO43592 962 aaKnown RBP13.94□□□□□ -0.18
VPS29-211ENST00000553128 PLS3P13797 630 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 SCN1AP35498 2009 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 SLC6A11P48066 632 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 ST3GAL1Q11201 340 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 TRIM29Q14134 588 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 IL17AQ16552 155 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 TTC38Q5R3I4 469 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 HDDC3Q8N4P3 179 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 MINDY1Q8N5J2 469 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 IGSF22Q8N9C0 903 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 IL17RCQ8NAC3 791 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 ADAM32Q8TC27 787 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 C2orf15Q8WU43 125 aaKnown RBP13.94□□□□□ -0.18
VPS29-211ENST00000553128 BICD1Q96G01 975 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 LRIG1Q96JA1 1093 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 PYM1Q9BRP8 204 aaKnown RBP13.94□□□□□ -0.18
VPS29-211ENST00000553128 MMTAG2Q9BU76 263 aaKnown RBP13.94□□□□□ -0.18
VPS29-211ENST00000553128 RPF1Q9H9Y2 349 aaKnown RBP13.94□□□□□ -0.18
VPS29-211ENST00000553128 C17orf75Q9HAS0 396 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 CAPN10Q9HC96 672 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 GCNT4Q9P109 453 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 RAXQ9Y2V3 346 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 PCDHB5Q9Y5E4 795 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 PCDH15Q96QU1 1955 aa13.94□□□□□ -0.18
VPS29-211ENST00000553128 SH3BP5O60239 455 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 OPHN1O60890 802 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 ADAM23O75077 832 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 PRPF40AO75400 957 aaKnown RBP13.93□□□□□ -0.18
VPS29-211ENST00000553128 KLF8O95600 359 aaPredicted RBP13.93□□□□□ -0.18
VPS29-211ENST00000553128 CKMP06732 381 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 USP17L7P0C7H9 530 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 CSH1P0DML2 217 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 CSH2P0DML3 217 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 CYP2F1P24903 491 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 GUCY2CP25092 1073 aa13.93□□□□□ -0.18
VPS29-211ENST00000553128 TIE1P35590 1138 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms