RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 FUBP3Q96I24 572 aaKnown RBP eCLIP15.04■□□□□ -0
PTCH1-226ENST00000553011 NT5C1BQ96P26 610 aa15.04■□□□□ -0
PTCH1-226ENST00000553011 MYADMQ96S97 322 aa15.04■□□□□ -0
PTCH1-226ENST00000553011 CRACR2AQ9BSW2 395 aa15.04■□□□□ -0
PTCH1-226ENST00000553011 B3GNT5Q9BYG0 378 aa15.04■□□□□ -0
PTCH1-226ENST00000553011 NR2E1Q9Y466 385 aa15.04■□□□□ -0
PTCH1-226ENST00000553011 CLDN5O00501 218 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 BDNFP23560 247 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 GBP2P32456 591 aaPredicted RBP15.03■□□□□ -0
PTCH1-226ENST00000553011 CCR2P41597 374 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 MAGEA11P43364 429 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 CUL2Q13617 745 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 DDR2Q16832 855 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 CDKAL1Q5VV42 579 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 OTOP3Q7RTS5 596 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 DNAJB7Q7Z6W7 309 aaPredicted RBP15.03■□□□□ -0
PTCH1-226ENST00000553011 SCN4BQ8IWT1 228 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 CRYBG2Q8N1P7 616 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 TDRD5Q8NAT2 981 aaKnown RBP15.03■□□□□ -0
PTCH1-226ENST00000553011 EHBP1Q8NDI1 1231 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 FAM200AQ8TCP9 573 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 ING5Q8WYH8 240 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 KAT5Q92993 513 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 TCEAL4Q96EI5 215 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 FAXDC2Q96IV6 333 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 TNIP3Q96KP6 325 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 TUBGCP2Q9BSJ2 902 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 FUCA2Q9BTY2 467 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 LRRC3Q9BY71 257 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 ZNF518BQ9C0D4 1074 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 ELOVL4Q9GZR5 314 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 INTS2Q9H0H0 1204 aaKnown RBP15.03■□□□□ -0
PTCH1-226ENST00000553011 CISHQ9NSE2 258 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 FANCLQ9NW38 375 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 USTQ9Y2C2 406 aa15.03■□□□□ -0
PTCH1-226ENST00000553011 MRPS23Q9Y3D9 190 aaKnown RBP15.03■□□□□ -0
PTCH1-226ENST00000553011 PATJQ8NI35 1801 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 MYL4P12829 197 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 CCDC130P13994 396 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 PRKCSHP14314 528 aaPredicted RBP15.02■□□□□ -0
PTCH1-226ENST00000553011 CACNA2D1P54289 1103 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 EPHA5P54756 1037 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 RPL10AP62906 217 aaKnown RBP15.02■□□□□ -0
PTCH1-226ENST00000553011 MYL5Q02045 173 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 VEPH1Q14D04 833 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 NFKBIBQ15653 356 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 SKOR2Q2VWA4 1001 aaPredicted RBP15.02■□□□□ -0
PTCH1-226ENST00000553011 ZNF394Q53GI3 561 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 TCP11X2Q5H9J9 407 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 MIIPQ5JXC2 388 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 PRSS36Q5K4E3 855 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 PAQR9Q6ZVX9 377 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 PDZD4Q76G19 769 aaPredicted RBP15.02■□□□□ -0
PTCH1-226ENST00000553011 ITIH5Q86UX2 942 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 TMC8Q8IU68 726 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 ARHGEF19Q8IW93 802 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 AOPEPQ8N6M6 819 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 C12orf29Q8N999 325 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 PSMG2Q969U7 264 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 NT5C1AQ9BXI3 368 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 ZNF334Q9HCZ1 680 aaPredicted RBP15.02■□□□□ -0
PTCH1-226ENST00000553011 AVENQ9NQS1 362 aaPredicted RBP15.02■□□□□ -0
PTCH1-226ENST00000553011 ASAH2Q9NR71 780 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 FAM49BQ9NUQ9 324 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 TMEM30AQ9NV96 361 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 TAB2Q9NYJ8 693 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 GCNT4Q9P109 453 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 ASB3Q9Y575 518 aa15.02■□□□□ -0
PTCH1-226ENST00000553011 MOSPD3O75425 235 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 LETM1O95202 739 aaPredicted RBP15.01□□□□□ -0.01
PTCH1-226ENST00000553011 GJA1P17302 382 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 CEBPBP17676 345 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 SLC9A1P19634 815 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 TBXAS1P24557 533 aaPredicted RBP15.01□□□□□ -0.01
PTCH1-226ENST00000553011 EEF1GP26641 437 aaKnown RBP15.01□□□□□ -0.01
PTCH1-226ENST00000553011 MTMR3Q13615 1198 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 NCAPHQ15003 741 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 VWA3BQ502W6 1294 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 CYP4A22Q5TCH4 519 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 POTEHQ6S545 545 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 VSTM1Q6UX27 236 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 RRAGAQ7L523 313 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 FAM35AQ86V20 835 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 RNF135Q8IUD6 432 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 NPAS3Q8IXF0 933 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 ZDHHC14Q8IZN3 488 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 FUKQ8N0W3 1084 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 PPM1KQ8N3J5 372 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 UBR7Q8N806 425 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 ST13P5Q8NFI4 369 aaPredicted RBP15.01□□□□□ -0.01
PTCH1-226ENST00000553011 SHKBP1Q8TBC3 707 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 FGF13Q92913 245 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 KHSRPQ92945 711 aaKnown RBP eCLIP15.01□□□□□ -0.01
PTCH1-226ENST00000553011 ACSF2Q96CM8 615 aaPredicted RBP15.01□□□□□ -0.01
PTCH1-226ENST00000553011 MED10Q9BTT4 135 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 NDST4Q9H3R1 872 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.01□□□□□ -0.01
PTCH1-226ENST00000553011 LIMD1Q9UGP4 676 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 MYO16Q9Y6X6 1858 aa15.01□□□□□ -0.01
PTCH1-226ENST00000553011 SLC38A8A6NNN8 435 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms